Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,506,666 – 11,506,766 |
Length | 100 |
Max. P | 0.819020 |
Location | 11,506,666 – 11,506,766 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -27.79 |
Consensus MFE | -16.58 |
Energy contribution | -17.78 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.44 |
Mean z-score | -1.97 |
Structure conservation index | 0.60 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.819020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11506666 100 - 22407834 AUCUCCACAAUGUCUGUUUCCGAUUCGGGUUUUUCGUGUAAAGGUGGCGCAGUUCCUUUAGUAGUACUUAUCGUACUAUUGGUAUUUCCAGGCGUUGUGU .....(((((((((((..((((...))))......((((.......)))).......((((((((((.....))))))))))......))))))))))). ( -28.70) >DroSec_CAF1 572 100 - 1 AUCUCCACAAUGUCUGUUUCUAAUUCGGGUUUUUCGUGUAAAGGUGGCACAGUUCCUUGAGUGGUAGUUAUCGUACUAUUGGUAUUUCCAGGCGUUGUGU .....(((((((((((......(((((((...((.((((.......))))))...)))))))((((((......))))))........))))))))))). ( -26.10) >DroSim_CAF1 572 100 - 1 AUCUCCACAAUGUCUGUUUCUAAUUCGGGUUUUUCGUUUAAAGGUGGCACAGUUCCUUGAGUGGUACUUAUCGUACUAUUUGUAUUUCCAGGCGUUGGGU ....((.(((((((((........................((((..........))))(((((((((.....))))))))).......))))))))))). ( -23.90) >DroEre_CAF1 3120 100 - 1 AUCUCCACAAUGUCUGCUUCUAAUUCGGCUUCUUCGUGUAAAGGUGGUGCAGUUCCUUUAGUAGUACUUGUCGUACUAUUGGUAUUGCCAUUUGUUGUGU .....((((((..(..(((.((...(((.....)))..)).)))..).(((((.((...((((((((.....)))))))))).))))).....)))))). ( -23.80) >DroYak_CAF1 578 100 - 1 AUUUCCACUAUGUCGGUUUCUACUUCGGAUUUUUCGUGUAAAGGUGGCGCAGUUCCUUUAGUAGUACUUAUCGUACUAUUGGUAUUGCCAGGCGUUGUGU .....(((.((((((((...(((...(((...((.((((.......)))))).)))..(((((((((.....))))))))))))..))).))))).))). ( -25.30) >DroAna_CAF1 47300 94 - 1 AUCUCCACGAUUUCCGGCUCUAUUUCAGCUUCUUUGGAAGAAGGUGGUGGAGCAGCGGAAGUGCUAGAAGUUGA------UUUAUUGUCGGGAGUUGUGG ....((((((((((((((..((..(((((((((.................((((.(....))))))))))))))------..))..)))))))))))))) ( -38.92) >consensus AUCUCCACAAUGUCUGUUUCUAAUUCGGGUUUUUCGUGUAAAGGUGGCGCAGUUCCUUUAGUAGUACUUAUCGUACUAUUGGUAUUGCCAGGCGUUGUGU .....(((((((((((...................((((.......)))).......((((((((((.....))))))))))......))))))))))). (-16.58 = -17.78 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:33 2006