Locus 3948

Sequence ID 2L_DroMel_CAF1
Location 11,505,227 – 11,505,342
Length 115
Max. P 0.607103
window6228

overview

Window 8

Location 11,505,227 – 11,505,342
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.26
Mean single sequence MFE -32.92
Consensus MFE -25.35
Energy contribution -25.72
Covariance contribution 0.37
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.77
SVM decision value 0.15
SVM RNA-class probability 0.607103
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11505227 115 - 22407834
AGACUAACCGCCGUCGUAGCCACAUCACCCUGCCGUACCCUCCACCCCCC-GCACCACAACGCACCGCACCACUCGAAUGGCUGAC----CAACAACCGGCAGCUGGCGGCGGACAACUU
.......((((((((((....))......((((((...............-((........))....(((((......))).))..----.......))))))..))))))))....... ( -29.90)
>DroSec_CAF1 71083 110 - 1
AGACUAACCGCCGUCGGAGCCACAUCACCCUGCCACGCCCCGCACCCCCCUGCAC-----C-CACCGCACCACUCGAAUGGCUGAC----CAACAACCGGCAGCUGGCGGCGGACAACUU
.......((((((((((.((...........((...))...(((......)))..-----.-....)).))........(((((.(----(.......)))))))))))))))....... ( -31.70)
>DroSim_CAF1 75442 115 - 1
AGACUAACCGCCGUCGGAGCCACAUCACCCUGCCACACCCCGCACCCCCC-GCACGACACCGGACCGCACCACUCGAAUGGCUGAC----CAACAACCGGCAGCUGGCGGCGGACAACUU
.......((((((((((.((..........(((........)))....((-(........)))...)).))........(((((.(----(.......)))))))))))))))....... ( -34.00)
>DroYak_CAF1 75028 105 - 1
AGACUAACCGCCGUCGGAGCCACAUCACCCCGUCGAAACCUGCACCACC---------------CCGCACCACACGAGUGGCUGACCGACCAGCAACCGGCAGCUGGCGGCGGACAACUU
.......((((((((((((((((.........(((.....(((......---------------..))).....)))))))))..))))(((((........)))))))))))....... ( -36.10)
>consensus
AGACUAACCGCCGUCGGAGCCACAUCACCCUGCCACACCCCGCACCCCCC_GCAC_____C_CACCGCACCACUCGAAUGGCUGAC____CAACAACCGGCAGCUGGCGGCGGACAACUU
.......((((((((((.(((..........((........))........................(((((......))).))..............)))..))))))))))....... (-25.35 = -25.72 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:32 2006