Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,504,887 – 11,504,993 |
Length | 106 |
Max. P | 0.661411 |
Location | 11,504,887 – 11,504,993 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.37 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -21.08 |
Energy contribution | -21.57 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -1.68 |
Structure conservation index | 0.71 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11504887 106 + 22407834 GAUAUGUGCUCGCCAUAUAUGAG----AUAUAUGUACAUAUAAACGGGGUGCAUAUGAUUUUUGGCCAACCGGUUUGGUUGUC----------AAAGAAAGAGCCAAGAUUGCGAGUCCA ....((..(((((..........----.(((((((((...........)))))))))..((((((((((((.....)))))((----------.......)))))))))..)))))..)) ( -29.70) >DroSec_CAF1 70739 110 + 1 GAUAUGUGCUCGCCAUAUAUGAUAAAUAUAUAUGUAUAUAUAAACGGAGUGCAUAUGAUUUUUGGCCAACCGGUUCGGUUGUC----------AAAGAAAGAGCCAAGAUUCCGAGUCCG .(((((..(((...((((((.....)))))).(((........))))))..)))))((.(((((((((((((...))))))((----------.......))))))))).))........ ( -28.60) >DroSim_CAF1 75102 106 + 1 GAUAUGUGCUCGCCAUAUAUGAG----AUAUAUGUGUAUAUAAACGGAGUGCAUAUGAUUUUUGGCCAACCGGUUCGGUUGUC----------AAAGAAAGAGCCAAGAUUCCGAGUCCG .(((((..(((..(((((((...----)))))))(((......))))))..)))))((.(((((((((((((...))))))((----------.......))))))))).))........ ( -29.20) >DroYak_CAF1 74664 108 + 1 GAUAUGUGCUCGCCAUAUAUACG----AU--------AUAUAAACCGAGUGCAUAUGAUUUUUGGCCAACCGGUUCGGUUCGCUUCGGUCUGUAAAGAAAGAGCGAAGAUUCAGAGUCCG .(((((..((((...((((((..----.)--------)))))...))))..))))).......((((....))))((((((.(((((.(((........))).))))).....))).))) ( -32.00) >consensus GAUAUGUGCUCGCCAUAUAUGAG____AUAUAUGUAUAUAUAAACGGAGUGCAUAUGAUUUUUGGCCAACCGGUUCGGUUGUC__________AAAGAAAGAGCCAAGAUUCCGAGUCCG .(((((..(((....((((((...............))))))....)))..)))))((.(((((((((((((...)))))).....................))))))).))........ (-21.08 = -21.57 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:31 2006