Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,503,619 – 11,503,737 |
Length | 118 |
Max. P | 0.826558 |
Location | 11,503,619 – 11,503,737 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.15 |
Mean single sequence MFE | -39.06 |
Consensus MFE | -22.40 |
Energy contribution | -26.22 |
Covariance contribution | 3.82 |
Combinations/Pair | 1.09 |
Mean z-score | -2.32 |
Structure conservation index | 0.57 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11503619 118 - 22407834 ACGCAGUGCCGAUGCUGCGGUGCAGUGC-AAAUGGG-CAUUAAGUCAACUCGCAUCGAGGAAGACAUUUGUCAAUCUUAGACGAUGCCGAAGCUGUCGUCAGAGAAACGUAUUGCAACAC .((((((......)))))).((((((((-.....((-((....(((..((((...))))...)))...))))..((((.((((((((....)).)))))).))))...)))))))).... ( -42.80) >DroVir_CAF1 106807 93 - 1 ---------------GACACGAGAGCGCUAAACGGGCCAUUAAGUCAACUGGCAUUGAGGAAGACAUUUGUCACUCCAUGUCG----CGACGAUGCUGUUAG--------AUCGCAGCGC ---------------(((..((..((.(.....).))..))..)))....(((((.(((...(((....))).))).)))))(----(..((((........--------))))..)).. ( -24.10) >DroSec_CAF1 69344 118 - 1 ACGCAGUGCCGAUGCUGCGGUGCAGUGC-AAAUGGG-CAUUAAGUCAACUCGCAUCGAGGAAGACAUUUGUCAAUCUUAGACGAUGCCGAAGCUGUCGUCAGAGAAACGUAUUGCAACAC .((((((......)))))).((((((((-.....((-((....(((..((((...))))...)))...))))..((((.((((((((....)).)))))).))))...)))))))).... ( -42.80) >DroSim_CAF1 73732 118 - 1 ACGCAGUGCCGAUGCUGCGGUGCAGUGC-AAAUGGG-CAUUAAGUCAACUCGCAUCGAGGAAGACAUUUGUCAAUCUUAGACGAUGCCGAAGCUGUCGUCAGAGAAACGUAUUGCAACAC .((((((......)))))).((((((((-.....((-((....(((..((((...))))...)))...))))..((((.((((((((....)).)))))).))))...)))))))).... ( -42.80) >DroYak_CAF1 73296 118 - 1 ACGCAGUGCCGAUGCUGCGGUGCAGUGC-AAAUGGG-CAUUAAGUCAACUCGCAUCGAGGAAGACAUUUGUCAAUCUUAGACGAUGCCGAAGCUGUCGUCAGAGAAACGUAUUGCAACAC .((((((......)))))).((((((((-.....((-((....(((..((((...))))...)))...))))..((((.((((((((....)).)))))).))))...)))))))).... ( -42.80) >consensus ACGCAGUGCCGAUGCUGCGGUGCAGUGC_AAAUGGG_CAUUAAGUCAACUCGCAUCGAGGAAGACAUUUGUCAAUCUUAGACGAUGCCGAAGCUGUCGUCAGAGAAACGUAUUGCAACAC .((((((......)))))).((((((((...............(((..((((...))))...))).........((((.((((((((....)).)))))).))))...)))))))).... (-22.40 = -26.22 + 3.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:30 2006