Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,501,992 – 11,502,083 |
Length | 91 |
Max. P | 0.645420 |
Location | 11,501,992 – 11,502,083 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 86.87 |
Mean single sequence MFE | -22.42 |
Consensus MFE | -15.49 |
Energy contribution | -16.04 |
Covariance contribution | 0.55 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.69 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11501992 91 - 22407834 AUGGCAAAUGGCAAUGGCAAAUGGCAGAUGCCGA-------CUGCCGAAUGCAAAAUAGGCGCAAAUAGAAAUCUGUCAAAGGAUUUGGCAAUGUUUC .((((..((.(((.(((((..((((....)))).-------.)))))..)))...))..)).))....(((((.((((((.....))))))..))))) ( -23.90) >DroSec_CAF1 67774 71 - 1 AUGGCAAAUGG-------------CAGAU--------------GCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC .((.(((((((-------------(((((--------------..(...((((.......))))....)..))))))).....))))).))....... ( -15.90) >DroSim_CAF1 72133 85 - 1 AUGGCAAAUGG------CAAAUGGCAGAUGCCGA-------CUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC .(((((..((.------(....).))..))))).-------.((((((((.(...((((((..........))))))....).))))))))....... ( -23.50) >DroEre_CAF1 72713 84 - 1 AUGGCAAAUGG------C-AAUGGCAGAUGCCGA-------CUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC .(((((..((.------(-...).))..))))).-------.((((((((.(...((((((..........))))))....).))))))))....... ( -21.60) >DroYak_CAF1 71675 91 - 1 AUGGCAAAUGG------C-AAUGGCAGAUGCCGACUGCCGACUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC .(((((..(((------(-(.((((....))))..)))))..)))))..((((.......))))....(((((.((((((.....))))))..))))) ( -27.20) >consensus AUGGCAAAUGG______C_AAUGGCAGAUGCCGA_______CUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC ..((((...............((((....))))..........(((((((.(...((((((..........))))))....).)))))))..)))).. (-15.49 = -16.04 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:29 2006