Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,498,049 – 11,498,169 |
Length | 120 |
Max. P | 0.655724 |
Location | 11,498,049 – 11,498,169 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.28 |
Mean single sequence MFE | -38.20 |
Consensus MFE | -20.53 |
Energy contribution | -20.82 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.42 |
Mean z-score | -1.86 |
Structure conservation index | 0.54 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11498049 120 + 22407834 CAGAAACUUCAAUCGCAGUUCGUUGUCACCGAAUGCCUGCAUCCGUCGAAGAUAGCCCACGAUUUGCAGGCACUUGGGUAGCUGGAGAUCCGUCCGCAGUUGUGCAACCAGCUGCACCAG ..............((((((.(((((..((((.((((((((...((((..(.....)..)))).)))))))).)))).((((((..((....))..)))))).))))).))))))..... ( -41.60) >DroVir_CAF1 101710 120 + 1 UAAAAACUUCAAUUUUAACUCGUUGUCACCAAAAGCUUGCAUGCGCCGCAGAUAACCGACGAUUUGCAAGCACUUGGGCAGCUGCAGAUCCAUGCGCAUCUGUGCCACAAGCUGCACGAG ..................(((((.....((((..(((((((..((.((........)).))...)))))))..))))(((((((((......)))(((....)))....))))))))))) ( -38.60) >DroGri_CAF1 146186 120 + 1 CAAAAACUUCAAUUUCAGCUCGUUGUCGCCAAAGGCCUGCAUGCGACGCAGAUAGCCGACAAUCUGCAGACACUUAGGCAGCUGCAGAUCCAUGCGCAACUGCGCCACAAGCUGCACAAG ...............(((((.(((((((((...)))((((.......))))......))))((((((((...(....)...))))))))....((((....)))).)).)))))...... ( -34.20) >DroWil_CAF1 745 120 + 1 CAAGAAUUUCAGCUUCAGUUCAUUGUCUCCGAACGCCUGCAUGCGACGCAGGUAACCCACAAUCUGCAAACACUUGGGUAGUUGCAGGUCCAAACGUAGUUGCGCCACCAAUUGGACCAG ...........((....((((.........))))....)).((((((((((((........))))))....((....)).))))))(((((((..((.(.....).))...))))))).. ( -30.80) >DroMoj_CAF1 95187 120 + 1 CAAAAACUUCAAUUUCAACUCGUUGUCGCCAAACGCCUGCAUGCGUCGCAAAUACCCCACAAUUUGCAAGCAUUUGGGUAACUGCAGAUCCAGGCGCAGCUGGGCCACUAGCUGCGCCAG ........................(((((.....(((((.((((...((((((........))))))..)))).)))))....)).)))...(((((((((((....))))))))))).. ( -40.60) >DroAna_CAF1 54817 120 + 1 CAGGAACUUGAGACGCAGCUCGUUGUCCCCAAAAGCCUGCAUUCGUCUCAAAUAGCCCACGAUUUGCAGGCACUUUGGCAGCUGCAAGUCUGUGCGCAGUUGCGCCACCAACUGCACGAG ......((((.(.(((((((.((.((..(((((.(((((((.((((............))))..)))))))..)))))..)).)).)).))))))(((((((......))))))).)))) ( -43.40) >consensus CAAAAACUUCAAUUUCAGCUCGUUGUCACCAAAAGCCUGCAUGCGUCGCAGAUAGCCCACAAUUUGCAAGCACUUGGGCAGCUGCAGAUCCAUGCGCAGCUGCGCCACCAGCUGCACCAG .....................((((.(.((((..(((((((.......................)))))))..))))))))).(((......)))(((((((......)))))))..... (-20.53 = -20.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:28 2006