Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,494,949 – 11,495,056 |
Length | 107 |
Max. P | 0.970800 |
Location | 11,494,949 – 11,495,056 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.32 |
Mean single sequence MFE | -15.95 |
Consensus MFE | -11.89 |
Energy contribution | -11.57 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.17 |
Mean z-score | -1.82 |
Structure conservation index | 0.75 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11494949 107 + 22407834 CAGAUAUUAAUAUUAACCAAAUUCAUUACCGCUUACACUUAAGUUUACUUAUUUGAAUUAUAUUGGUUUUAUAUUUAAGAAUACCGCCGCUAAAGCUGCCCGAAA-AA ........(((((.(((((((((((.....(((((....))))).........)))))....))))))..)))))..........((.((....)).))......-.. ( -12.24) >DroSec_CAF1 58819 88 + 1 AAA--------------------UAAUACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCACGAAACUA (((--------------------(((.((((.........))))....)))))).........((((((((....))))))))..((.((....)).))......... ( -17.80) >DroSim_CAF1 63572 84 + 1 AAA--------------------UAAUACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCA----ACUA (((--------------------(((.((((.........))))....)))))).........((((((((....))))))))..((.((....)).)).----.... ( -17.80) >consensus AAA____________________UAAUACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCACGAAACUA .........................................((((((......))))))....((((((((....))))))))..((.((....)).))......... (-11.89 = -11.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:27 2006