| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,492,470 – 11,492,565 |
| Length | 95 |
| Max. P | 0.619413 |
| Location | 11,492,470 – 11,492,565 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 94.63 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -26.50 |
| Energy contribution | -26.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11492470 95 + 22407834 GAG-ACCCGGAGCCAAUGGCAUUCUAUAGCGUCAGCGUCUCCAGCUGCCCGCUCGAUGGUUAUUGGUUCGCGUUGCAGAAAUAUAAUAUA----CAC----ACA ..(-...(((((((((((((..((...((((.((((.......))))..)))).))..))))))))))).))...)..............----...----... ( -26.60) >DroSec_CAF1 56311 95 + 1 GAG-AUCCGGAGCCAAUGGCAUUCUAUAGCGUCAGCGUCUCCAGCUGCCCGCUCGAUGGUUAUUGGUUCGCGUUGCAGAAAUAUAAUAUA----CAC----ACA ..(-...(((((((((((((..((...((((.((((.......))))..)))).))..))))))))))).))...)..............----...----... ( -26.60) >DroSim_CAF1 61118 95 + 1 GAG-ACCCGGAGCCAAUGGCAUUCUAUAGCGUCAGCGUCUCCAGCUGCCCGCUCGAUGGUUAUUGGUUCGCGUUGCAGAAAUAUAAUAUA----CAC----ACA ..(-...(((((((((((((..((...((((.((((.......))))..)))).))..))))))))))).))...)..............----...----... ( -26.60) >DroEre_CAF1 62937 99 + 1 GAG-ACCCGGAGCCAAUGGCAUUCUAUAGCGUCAGCGUCUCCAGCUGCCCGCUCGAUGGUUAUUGGUUCGCGUUGCAGAAAUAUAAUAUACACACAC----ACA ..(-...(((((((((((((..((...((((.((((.......))))..)))).))..))))))))))).))...).....................----... ( -26.60) >DroYak_CAF1 62055 95 + 1 GAG-ACCCGGAGCCAAUGGCAUUCUAUAGCGUCAGCGUCUCCAGCUGCCCGCUCGAUGGUUAUUGGUUCGCGUUGCAGAAAUAUAAUACA----CAC----ACA ..(-...(((((((((((((..((...((((.((((.......))))..)))).))..))))))))))).))...)..............----...----... ( -26.60) >DroAna_CAF1 49697 100 + 1 GGGCAGCCGGAGCCAAUGGCAUUCUGAAGCGUCAGCGUCUCCAGCUGCCCGCUCGAUGGUUAUUGGUUCGCGUUGCAGUAAUAUAAUAUA----CACAGAUACA ..(((((..(((((((((((..((.((.(((.((((.......))))..)))))))..)))))))))))..))))).(((........))----)......... ( -32.90) >consensus GAG_ACCCGGAGCCAAUGGCAUUCUAUAGCGUCAGCGUCUCCAGCUGCCCGCUCGAUGGUUAUUGGUUCGCGUUGCAGAAAUAUAAUAUA____CAC____ACA .......(((((((((((((..((...((((.((((.......))))..)))).))..))))))))))).))................................ (-26.50 = -26.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:26 2006