| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,212,997 – 1,213,100 |
| Length | 103 |
| Max. P | 0.500000 |
| Location | 1,212,997 – 1,213,100 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.10 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -18.67 |
| Energy contribution | -17.90 |
| Covariance contribution | -0.78 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1212997 103 + 22407834 --------------AGUCCAGAUGCAAAGUGGCUUAAGUGUUGAGCUUAAGUUAUUAGCUGCAAGCUGGCCCAUAAUGGACUCGAAAAUUGGUU-UUCCUCAAAGUAGUUUUUGCUAA-- --------------((((((...((..((((((((((((.....))))))))))))(((.....))).))......))))))(((((((((.((-(.....))).)))))))))....-- ( -27.80) >DroPse_CAF1 11682 118 + 1 CUCUUGUUUCGGCCCGGCUAGAUGCAAAGUGGCUCAAGUGUUGGGCUUAUGUUAUUAGCUAAAAGCCGGGCCAUAAUGGACUUGAAAAUUGGUUUUUCCUCAAAGUAGUUUUCAUUUU-- ...(..((..(((((((((....((..((((((..((((.....))))..)))))).))....)))))))))..))..)...(((((((((.(((......))).)))))))))....-- ( -37.10) >DroSim_CAF1 8715 103 + 1 --------------AGUCCAGAUGCAAAGUGGCUUAAGUGUUGAGCUUAUGUUAUUAGCUGCAAGCUGGCCCAUAAUGGACUCGAAAAUUGGUU-UUCCUUAAAGUAGUUUUUGCUAG-- --------------((((((...((..((((((.(((((.....))))).))))))(((.....))).))......))))))(((((((((.((-(.....))).)))))))))....-- ( -24.40) >DroEre_CAF1 8195 105 + 1 --------------AGUCCAGAUGCAAAGUGGCUUAAGUGUGGGGCUUAUGUUAUUAGCUGAAAGCUGGCCCAUAAUGGACUCGAAAAUUGCUU-UUCCUCAAAGUAGUUUUCGCAGGCC --------------((((((...((......)).....((((((((....))..(((((.....))))))))))).))))))((((((((((((-(.....)))))))))))))...... ( -31.00) >DroYak_CAF1 8949 105 + 1 --------------AGUCCAGAUGCAAAGUGGCUUAAGUGUUGAGCUUAUGUUAUUAGCUGAAAGCUGGCUCAUAAUGGACUAGAAAAUUGGUU-UUCCUCAAAGUAGUUUUUGCAGGGU --------------((((((...((..((((((.(((((.....))))).))))))(((.....))).))......))))))............-.(((((((((....))))).)))). ( -25.20) >DroPer_CAF1 11537 118 + 1 CUCUUGUUUUGGCCCGGCUAGAUGCAAAGUGGCUCAAGUGUUGGGCUUAUGUUAUUAGCUAAAAGCCGGGCCAUAAUGGACUUGAAAAUUGGUUUUUCCUCAAAGUAGUUUUCAUUUU-- ...(..((.((((((((((....((..((((((..((((.....))))..)))))).))....)))))))))).))..)...(((((((((.(((......))).)))))))))....-- ( -39.20) >consensus ______________AGUCCAGAUGCAAAGUGGCUUAAGUGUUGAGCUUAUGUUAUUAGCUGAAAGCUGGCCCAUAAUGGACUCGAAAAUUGGUU_UUCCUCAAAGUAGUUUUCGCUAG__ ...............(((((.........(((((..(((....(((....)))....)))...)))))........))))).(((((((((.((........)).)))))))))...... (-18.67 = -17.90 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:54 2006