Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,485,244 – 11,485,364 |
Length | 120 |
Max. P | 0.980452 |
Location | 11,485,244 – 11,485,364 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -38.23 |
Consensus MFE | -31.30 |
Energy contribution | -32.17 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -2.94 |
Structure conservation index | 0.82 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11485244 120 + 22407834 CAUCACCCACACGGAGGUCCACCUCCCCCUCGUCACCAUCAUCACCAUCGUGGCAGACAUGGUGCUGGUGGACGCUGUGGACACGGACACCAGCACCAGCCUUUUCCACCACCGCCUCAU ............(((((....))))).......................((((.(((..(((((((((((..((.((....))))..)))))))))))...))).))))........... ( -42.10) >DroSec_CAF1 49066 120 + 1 CAUCACCCACACGGAGGUCCGCCACCCCCUCGUCACCAUCACCACCAUCGUGGCAGACAUGGUGGUGGUAGACACUGUGGACACGGACCCCAGCACCAGCCUUUUCCACCACCCCCUCAU ............((.((((((((((......(((......((((((((((((.....)))))))))))).)))...))))...)))))))).((....)).................... ( -38.20) >DroSim_CAF1 52848 120 + 1 CAUCACCCACACGGAGGUCCGCCUCCCCCUCGUCACCAUCACCACCAUCGUGGCAGACAUGGUGGUGGUAGACACUGUGGACACGGACCCCAGCACCAGCCUUUUCCACCACCCCAUCAU ......(((((.(((((....))))).....(((......((((((((((((.....)))))))))))).)))..)))))....(((.....((....))....)))............. ( -39.80) >DroYak_CAF1 54726 114 + 1 CACCACCCGCCUGGAGGUCCGCCUCCCCCUCGCCAUCACCACCACCAUCGUGGCAGACAUGGUAGUGGUAGACACUGUGGACACGGAC------ACCAGCGUUUUCCACCACCCCAUCAU .......(((.(((..(((((..(((....((...(((((((.(((((.((.....))))))).))))).))...)).)))..)))))------.))))))................... ( -32.80) >consensus CAUCACCCACACGGAGGUCCGCCUCCCCCUCGUCACCAUCACCACCAUCGUGGCAGACAUGGUGGUGGUAGACACUGUGGACACGGACCCCAGCACCAGCCUUUUCCACCACCCCAUCAU ......((((..(((((....)))))..............((((((((((((.....)))))))))))).......))))....(((.....((....))....)))............. (-31.30 = -32.17 + 0.88)
Location | 11,485,244 – 11,485,364 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -50.65 |
Consensus MFE | -41.09 |
Energy contribution | -41.52 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.21 |
Mean z-score | -2.05 |
Structure conservation index | 0.81 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11485244 120 - 22407834 AUGAGGCGGUGGUGGAAAAGGCUGGUGCUGGUGUCCGUGUCCACAGCGUCCACCAGCACCAUGUCUGCCACGAUGGUGAUGAUGGUGACGAGGGGGAGGUGGACCUCCGUGUGGGUGAUG .....((.((.((((...(((((((((((((((..(((.......)))..))))))))))).)))).)))).)).))...........(.(.(.(((((....))))).).).)...... ( -54.60) >DroSec_CAF1 49066 120 - 1 AUGAGGGGGUGGUGGAAAAGGCUGGUGCUGGGGUCCGUGUCCACAGUGUCUACCACCACCAUGUCUGCCACGAUGGUGGUGAUGGUGACGAGGGGGUGGCGGACCUCCGUGUGGGUGAUG ....................(((.(..(.(((((((((..((.(..((((.((((.(((((((((......))).)))))).))))))))..).))..))))))))).)..).))).... ( -47.60) >DroSim_CAF1 52848 120 - 1 AUGAUGGGGUGGUGGAAAAGGCUGGUGCUGGGGUCCGUGUCCACAGUGUCUACCACCACCAUGUCUGCCACGAUGGUGGUGAUGGUGACGAGGGGGAGGCGGACCUCCGUGUGGGUGAUG ....................(((.(..(.(((((((((.(((.(..((((.((((.(((((((((......))).)))))).))))))))..).))).))))))))).)..).))).... ( -51.90) >DroYak_CAF1 54726 114 - 1 AUGAUGGGGUGGUGGAAAACGCUGGU------GUCCGUGUCCACAGUGUCUACCACUACCAUGUCUGCCACGAUGGUGGUGGUGAUGGCGAGGGGGAGGCGGACCUCCAGGCGGGUGGUG ...................((((((.------((((((.(((.(..((((((((((((((((((.....)).))))))))))))..))))..).))).))))))..))).)))....... ( -48.50) >consensus AUGAGGGGGUGGUGGAAAAGGCUGGUGCUGGGGUCCGUGUCCACAGUGUCUACCACCACCAUGUCUGCCACGAUGGUGGUGAUGGUGACGAGGGGGAGGCGGACCUCCGUGUGGGUGAUG ....................(((.(..(.(((((((((.(((.(..(((((..(((((((((((.....)).)))))))))...).))))..).))).))))))))).)..).))).... (-41.09 = -41.52 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:13 2006