Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,485,088 – 11,485,194 |
Length | 106 |
Max. P | 0.583246 |
Location | 11,485,088 – 11,485,194 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -16.77 |
Consensus MFE | -14.89 |
Energy contribution | -14.57 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.09 |
Mean z-score | -1.74 |
Structure conservation index | 0.89 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11485088 106 + 22407834 CAACGGACGUAUAAACAUAUAUA--AUAAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUGUUCUCAAAAAUAUUAGUCAUACAUCUUUUCAGAUCGUUGCUCUAAA (((((((((((((....))))).--...(((((((........(((((.(....).))))).....)))))))....)))....((((....)))))))))....... ( -13.72) >DroSec_CAF1 48910 106 + 1 CAGCGGACGUAUAAAUAUAUACAUAUAUAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUAUUCUCAAAAAUAUUAGUCAUACAUCAUUUCAGAUCGUUGC--UAAA (((((((((((.((((((((....)))))))).))).......(((((.(....).)))))................)))....(((......)))))))).--.... ( -16.60) >DroSim_CAF1 52692 106 + 1 CAGCGGACGUAUAAAUAUAUACAUAUAUAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUAUUCUCAAAAAUAUUAGUCAUAGAUCUUUUCAGAUCGUUGC--UAAA .((((((((((.((((((((....)))))))).))).......(((((.(....).)))))................)))...(((((....)))))..)))--)... ( -20.00) >consensus CAGCGGACGUAUAAAUAUAUACAUAUAUAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUAUUCUCAAAAAUAUUAGUCAUACAUCUUUUCAGAUCGUUGC__UAAA (((((((((((((....))))).....((((((((...(((...((((.(....).)))))))...))))))))...)))....(((......))))))))....... (-14.89 = -14.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:11 2006