Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,484,628 – 11,484,732 |
Length | 104 |
Max. P | 0.851931 |
Location | 11,484,628 – 11,484,732 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 87.81 |
Mean single sequence MFE | -24.57 |
Consensus MFE | -20.83 |
Energy contribution | -20.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.85 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11484628 104 - 22407834 GGAUCAGCUGCUUAAAUGUUAUUUACAAUUUAGAGUGGCAUUGUAUUUGGUUGCCAAAAAAUAAUAUAUAGGUUUAUUUUUGG--------AAGAGUUGUUUGUUGAUAACA .((((((.(((...((((((((((........))))))))))))).)))))).(((((((..(((......)))..)))))))--------....((((((....)))))). ( -20.70) >DroSec_CAF1 48426 104 - 1 GUAUCAGCUGCUUAAAUGUUAUUCACAAUAUAGAGUGGCAUUGUAUUCGGUUGCCAAAAAAUAAUCUAUAGGUUUAUUUUUGG--------AAGAGUUGUUUGUUGAUAACA ....((((((..((((((((((((........)))))))))).))..))))))(((((((..((((....))))..)))))))--------....((((((....)))))). ( -26.40) >DroSim_CAF1 52205 104 - 1 CGAUCAGCUGCUUAAAUGUUAUUCACAAUAUAGAGUGGCAUUGUAUUCGGUUGCCAAAAAAUAACCUAUAGGUUUAUUUUUGG--------AAGAGUUGUUUGUUGAUAACA ....((((((..((((((((((((........)))))))))).))..))))))(((((((..((((....))))..)))))))--------....((((((....)))))). ( -29.00) >DroYak_CAF1 54107 112 - 1 GGCUCAGCUGAUAAAAAGUUAUUCUCAAUCUAGAGUGGCAUUGUAUUUGGUUGCCAAAAAAUAACCUGUAGGUUUAUUCUUAGAAGCUUCGAAGAGUUGUUCGUUGAUAAUA ....((((..(...((.((((((((......)))))))).))....)..)))).(((..((((((((..((((((........))))))...)).))))))..)))...... ( -22.20) >consensus GGAUCAGCUGCUUAAAUGUUAUUCACAAUAUAGAGUGGCAUUGUAUUCGGUUGCCAAAAAAUAACCUAUAGGUUUAUUUUUGG________AAGAGUUGUUUGUUGAUAACA ....((((((....((((((((((........)))))))))).....))))))(((((((..((((....))))..)))))))............((((((....)))))). (-20.83 = -20.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:10 2006