Locus 3932

Sequence ID 2L_DroMel_CAF1
Location 11,474,608 – 11,474,699
Length 91
Max. P 0.803564
window6200

overview

Window 0

Location 11,474,608 – 11,474,699
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.50
Mean single sequence MFE -21.48
Consensus MFE -11.71
Energy contribution -11.22
Covariance contribution -0.50
Combinations/Pair 1.29
Mean z-score -2.42
Structure conservation index 0.55
SVM decision value 0.62
SVM RNA-class probability 0.803564
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11474608 91 - 22407834
--------------------AAAUUUGACAAUGGAAAUCAUAUGUCAUCAUUAUUAACAGUGAGAUGAUUCCAUUUUCCGGCACAACGGCC-GCACAUAUGGCCCGCUUCCA--------
--------------------......((.(((((((.((((......(((((......))))).))))))))))).)).((......((((-(......))))).....)).-------- ( -20.90)
>DroVir_CAF1 84444 92 - 1
ACA-----------------AAAUUUGACAAUGAAAAUCAUAUGUCAUCAUUAUUAACAGCGAAAUGAUUUCAUU-GCC-GCACAAUGGCC-GCACAUAUGGCCUGCUUCCA--------
...-----------------.....((((((((.....))).)))))............(((.((((....))))-..)-)).....((((-(......)))))........-------- ( -20.10)
>DroPse_CAF1 41417 99 - 1
--------------------AAAUUUGACAAUGAAAAUCAUAUGUCAUCAUUAUUAACAGUGAGAUGCUUCCAUUUUCCGGCACAAUGGCC-GCACAUAUGGCCCGCUUCCACUGCCACU
--------------------.....((((((((.....))).)))))..........(((((.((.((..((((....((((......)))-).....))))...)).)))))))..... ( -25.90)
>DroGri_CAF1 117307 91 - 1
--------------------AAAUUUGACAAUGAAAAUCAUAUGUCAUCAUUAUUAACAGUGAAAUGAUUUCAUUUUCC-ACACAAUGGCCCGCACAUAUGUCCUGCUUCCA--------
--------------------.....((((((((.....))).)))))............((((((((....)))))..)-))....(((...(((.........)))..)))-------- ( -12.50)
>DroMoj_CAF1 70873 110 - 1
ACAACAAUCGGAACAUGAACAAAUUUGACAAUGAAAAUCAUAUGUCAUCAUUAUUAACAGCGAAAUGAUUUCGUU-UGC-UUACAAUAGUCAGCACAUAUGGCUGGCUUCCA--------
.........((((............((((((((.....))).)))))....((((...(((.(((((....))))-)))-)...))))((((((.(....))))))))))).-------- ( -23.60)
>DroPer_CAF1 42639 99 - 1
--------------------AAAUUUGACAAUGAAAAUCAUAUGUCAUCAUUAUUAACAGUGAGAUGCUUCCAUUUUCCGGCACAAUGGCC-GCACAUAUGGCCCGCUUCCACUGCCACU
--------------------.....((((((((.....))).)))))..........(((((.((.((..((((....((((......)))-).....))))...)).)))))))..... ( -25.90)
>consensus
____________________AAAUUUGACAAUGAAAAUCAUAUGUCAUCAUUAUUAACAGUGAAAUGAUUCCAUUUUCC_GCACAAUGGCC_GCACAUAUGGCCCGCUUCCA________
.........................((((((((.....))).)))))...........(((((((((....)))))...........((((.........))))))))............ (-11.71 = -11.22 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:05 2006