Locus 3931

Window 8

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11471628 103 + 22407834
UUUAAUUUGCCGGAAAUAUUUUCCAGCCCACUCUGG-AGCAUUUCCC-------CCACUGCCGGGCUAAUCUUUUUGGCAUUUCUUUCAUUUUU---UUUUCCCGUUCACUCGA
.......((((((((((...((((((......))))-)).))))))(-------((......)))...........))))..............---................. ( -20.80)
>DroSec_CAF1 35172 100 + 1
UUUAAUUUGCCGGAAAUAUUUUCCAGCCCACUCUGG-AGCAUUUGCC-------CCACUGCCGGGCUAAUCU---UGGCAUUUCUUUCAUUUUU---UUUUACCCCUGACUCGA
.......((((((((.....))))(((((.(..(((-.((....)).-------)))..)..))))).....---.))))..............---................. ( -24.20)
>DroSim_CAF1 37783 102 + 1
UUUAAUUUGCCGGAAAUAUUUUGCAGCCCACUCUGG-AGCAUUUCCC-------CCACAGCCGGGCUAAUCUUUUUGGCAUUUCUUUCAUUUU----UUUUACCCCUGACUCGA
.......(((((((((.(((....(((((.((.(((-..........-------))).))..)))))))).))))))))).............----................. ( -21.00)
>DroEre_CAF1 35751 104 + 1
UUUAAUUUGCCGGAAAUAUUUUCCAGCCCACUCUGG-AGCAUUUCCCCACUUACCCACUUCCGGGCUAAUCUUUUUGGCAUUUCUUUCAUUUUU---------UCCUGACUCGA
.......((((((((((...((((((......))))-)).)))))).......(((......)))...........))))..............---------........... ( -21.00)
>DroYak_CAF1 36207 112 + 1
UUUAAUUUGCCGGAAAUAUUUUCCAGCCCAUUCUGG-AGCAUUUUCCC-CAGCCCCGCUGCCGAGCUAAUCUUUUUGGCAUUUCUUUCAUUUUUCAUUUUUUUGGCUGACUCGA
...........(((((....((((((......))))-))...))))).-(((((.((....)).(((((.....)))))........................)))))...... ( -23.00)
>DroAna_CAF1 33099 90 + 1
UUUAAUUUGCCGGAAAUAUUUUUCAGCCCACUUUUGGGGGAGACUCU-------UCUUUUUGCGGCUAAUCUGUU----------UUUAUUUUU-------UUGGGGAAGUCGA
.(..((((.((.((((....))))((((((.....((((....))))-------......)).))))........----------.........-------...)).))))..) ( -18.50)
>consensus
UUUAAUUUGCCGGAAAUAUUUUCCAGCCCACUCUGG_AGCAUUUCCC_______CCACUGCCGGGCUAAUCUUUUUGGCAUUUCUUUCAUUUUU___UUUUACCCCUGACUCGA
.......((((((((.....))))(((((....(((..................))).....))))).........)))).................................. ( -9.49 = -10.64 +   1.14) 

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Window 9

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11471628 103 - 22407834
UCGAGUGAACGGGAAAA---AAAAAUGAAAGAAAUGCCAAAAAGAUUAGCCCGGCAGUGG-------GGGAAAUGCU-CCAGAGUGGGCUGGAAAAUAUUUCCGGCAAAUUAAA
((..(....)..))...---..............((((.........((((((.(..(((-------((......))-)))..)))))))((((.....))))))))....... ( -26.60)
>DroSec_CAF1 35172 100 - 1
UCGAGUCAGGGGUAAAA---AAAAAUGAAAGAAAUGCCA---AGAUUAGCCCGGCAGUGG-------GGCAAAUGCU-CCAGAGUGGGCUGGAAAAUAUUUCCGGCAAAUUAAA
((...(((.........---.....)))..))..((((.---.....((((((.(..(((-------(((....)))-)))..)))))))((((.....))))))))....... ( -30.34)
>DroSim_CAF1 37783 102 - 1
UCGAGUCAGGGGUAAAA----AAAAUGAAAGAAAUGCCAAAAAGAUUAGCCCGGCUGUGG-------GGGAAAUGCU-CCAGAGUGGGCUGCAAAAUAUUUCCGGCAAAUUAAA
....(((.(..(((...----....((..(....)..)).......(((((((.((.(((-------((......))-))).))))))))).....)))..).)))........ ( -28.00)
>DroEre_CAF1 35751 104 - 1
UCGAGUCAGGA---------AAAAAUGAAAGAAAUGCCAAAAAGAUUAGCCCGGAAGUGGGUAAGUGGGGAAAUGCU-CCAGAGUGGGCUGGAAAAUAUUUCCGGCAAAUUAAA
((...(((...---------.....)))..))..((((.......(((.(((....).)).)))....(((((((.(-((((......)))))...)))))))))))....... ( -27.90)
>DroYak_CAF1 36207 112 - 1
UCGAGUCAGCCAAAAAAAUGAAAAAUGAAAGAAAUGCCAAAAAGAUUAGCUCGGCAGCGGGGCUG-GGGAAAAUGCU-CCAGAAUGGGCUGGAAAAUAUUUCCGGCAAAUUAAA
....(((((((.......................((((..............)))).((...(((-(((......))-))))..))))))((((.....)))))))........ ( -25.84)
>DroAna_CAF1 33099 90 - 1
UCGACUUCCCCAA-------AAAAAUAAA----------AACAGAUUAGCCGCAAAAAGA-------AGAGUCUCCCCCAAAAGUGGGCUGAAAAAUAUUUCCGGCAAAUUAAA
.............-------.........----------....((((.((((.(((....-------....((...((((....))))..))......))).)))).))))... ( -12.54)
>consensus
UCGAGUCAGCGGAAAAA___AAAAAUGAAAGAAAUGCCAAAAAGAUUAGCCCGGCAGUGG_______GGGAAAUGCU_CCAGAGUGGGCUGGAAAAUAUUUCCGGCAAAUUAAA
..................................((((.........(((((((.((((..............)))).)).....)))))((((.....))))))))....... (-10.39 = -12.31 +   1.92) 

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:04 2006