Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,470,510 – 11,470,628 |
Length | 118 |
Max. P | 0.500000 |
Location | 11,470,510 – 11,470,628 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -24.41 |
Consensus MFE | -19.47 |
Energy contribution | -19.27 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.17 |
Mean z-score | -2.22 |
Structure conservation index | 0.80 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11470510 118 - 22407834 GUGCUGCAUCGAAUAAGGCCUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGUGUAAUAAAGCAA .((((((((((.....((((((...--...(((((((.....))))).))((((((........(....)........)))))).......)))..))).....)))))).....)))). ( -23.69) >DroPse_CAF1 35602 118 - 1 GCGGUGCAUCGAAUAUGGACUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGUCGCAAUAAAACAA (((..(((((((...(((..(((((--(..(((((((.....))))).))..))))))..................(((......)))..))).)))....))))..))).......... ( -23.60) >DroSec_CAF1 34063 120 - 1 GUGCUGCAUCGCAUAAGGCAUGAAAAAAAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGUGCAAUAAAGCAA .(((((((((((((..((((..........(((((((.....))))).))((((((........(....)........))))))...........))))..))))))))).....)))). ( -30.69) >DroYak_CAF1 35143 118 - 1 GUGCUGCAUCGAAAAAGGCCUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGCGCAAUAAAGCAA (((((((((((.....(((.(....--.).)))((((((((((((.....)))))))))))).........)))...((.((((........))))..))..)))))))).......... ( -26.60) >DroAna_CAF1 32088 117 - 1 CCGCCGGA-CCAAUAAGGCCUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGUGCAAUAAAAAAA .....(.(-((.((..((((((...--...(((((((.....))))).))((((((........(....)........)))))).......)))..)))..))..))).).......... ( -18.29) >DroPer_CAF1 36637 118 - 1 GCGGUGCAUCGAAUAUGGACUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGUCGCAAUAAAACAA (((..(((((((...(((..(((((--(..(((((((.....))))).))..))))))..................(((......)))..))).)))....))))..))).......... ( -23.60) >consensus GCGCUGCAUCGAAUAAGGCCUGAAA__AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGCGCAAUAAAACAA (((((((((.......((((((........(((((((.....))))).))((((((........(....)........)))))).......)))..)))..))))))))).......... (-19.47 = -19.27 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:03 2006