Locus 3929

Sequence ID 2L_DroMel_CAF1
Location 11,468,647 – 11,468,740
Length 93
Max. P 0.751970
window6196

overview

Window 6

Location 11,468,647 – 11,468,740
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.26
Mean single sequence MFE -26.20
Consensus MFE -13.18
Energy contribution -13.18
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.50
SVM decision value 0.48
SVM RNA-class probability 0.751970
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11468647 93 - 22407834
UUAACA--CAUGACGCACUAAAUACAGAU-CGCCGAUUGGCGACAUGGACAUGUGUAC--GGCGGC---------------UUUUCU-------GUAUUUAUGGCAACAUGAUUUAUAUC
......--((((..((..((((((((((.-.((((....((.((((....))))))..--..))))---------------...)))-------)))))))..))..))))......... ( -30.10)
>DroPse_CAF1 32775 93 - 1
UUAACACACAUGACGCGCUAAAUACAGAUUUGCCGA-----GACAUGGACAUGUGUUUCAUGCAGU--------------CGGACUC-------GUAUUUAUGGCAACAUGAUUUAUAG-
........((((..((..(((((((.((....((((-----..(((((((....).))))))...)--------------)))..))-------)))))))..))..))))........- ( -21.50)
>DroSim_CAF1 34376 93 - 1
UUAACA--CAUGACGCACUAAAUACAGAU-CGCCGAUUGGCGACAUGGACAUGUGUAC--GGCGGC---------------UUUUUU-------GUAUUUAUGGCAACAUGAUUUAUAUC
......--((((..((..((((((((((.-.((((....((.((((....))))))..--..))))---------------...)))-------)))))))..))..))))......... ( -27.50)
>DroYak_CAF1 33165 93 - 1
UUAACA--CAUGACGCACUAAAUACAGAU-CGCCGAUUGGCGACAUGGACAUGUGUAC--GGCGGC---------------UUUUCA-------GUAUUUAUGGCAACAUGAUUUAUAUC
......--((((..((..(((((((.((.-.((((....((.((((....))))))..--..))))---------------...)).-------)))))))..))..))))......... ( -24.80)
>DroAna_CAF1 30374 96 - 1
UUAACA--CAUGACGCACUAAAUACAGAUUUGCCGA-----GACAUGGACAUGUGUAU--UGCAGU---------------UUUUCGGUAUUCGGUAUUUAUGGCAACAUGAUUUAUAUC
......--((((..((..(((((((.((..((((((-----((....(((.(((....--.)))))---------------))))))))).)).)))))))..))..))))......... ( -25.40)
>DroPer_CAF1 33800 107 - 1
UUAACACACAUGACGCGCUAAAUACAGAUUUUCCGA-----GACAUGGACAUGUGUUUCAUGCAGUCUCCGACUCGGACUCGGACUC-------GUAUUUAUGGCAACAUGAUUUAUAG-
........((((..((..(((((((.((...(((((-----(.(((((((....).)))))).....((((...)))))))))).))-------)))))))..))..))))........- ( -27.90)
>consensus
UUAACA__CAUGACGCACUAAAUACAGAU_CGCCGA_____GACAUGGACAUGUGUAC__GGCAGC_______________UUUUCC_______GUAUUUAUGGCAACAUGAUUUAUAUC
........((((..((..(((((((.................((((....))))((.....))...............................)))))))..))..))))......... (-13.18 = -13.18 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:02 2006