Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,451,479 – 11,451,579 |
Length | 100 |
Max. P | 0.989549 |
Location | 11,451,479 – 11,451,579 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.65 |
Mean single sequence MFE | -17.24 |
Consensus MFE | -8.62 |
Energy contribution | -8.62 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.62 |
Structure conservation index | 0.50 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11451479 100 + 22407834 CUUCAGCCCAUCAUCAUCUCCAUCU------CUCGGCUACCCGGGCACUCCUCCACUUCUCGUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA ....((((((.....(((((...((------(((((....)).(((((.............)).)))....)))))..))))).....))..)))).......... ( -21.22) >DroSec_CAF1 15314 81 + 1 CUUCAGCCCAUC---GACUCCAUCU------C----------------UCCUCCACUUCUCCUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA ....((((...(---((....((((------(----------------..(((((...............)).)))..)))))....)))..)))).......... ( -13.26) >DroSim_CAF1 17700 81 + 1 CUUCAGCCCAUC---AUCUCCAUCU------C----------------UCCUCCACUUCUCCUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA ....((((...(---(.....((((------(----------------..(((((...............)).)))..))))).....))..)))).......... ( -13.16) >DroEre_CAF1 15744 76 + 1 CUCGAGCACAUC---AUCU---------------------------ACUUCUCCACUUCUCUCCUCCAUCUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA ...((((.((.(---(...---------------------------...((((.(((.(((..........)))))).))))......)).))))))......... ( -15.40) >DroYak_CAF1 15366 103 + 1 CUUCAGCCCAUC---AUCUCCAUCUCCAUCUCUCGGCUACCCGGGCACUUCUCUACUUCUCCUCUCCAGUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA ....((((...(---(.....(((((...(((((((((....(((...............)))....)))))))))..))))).....))..)))).......... ( -23.16) >consensus CUUCAGCCCAUC___AUCUCCAUCU______C______________ACUCCUCCACUUCUCCUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA ..................................................(((.(((.(((..........)))))).)))..........((((.......)))) ( -8.62 = -8.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:53 2006