Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,450,240 – 11,450,334 |
Length | 94 |
Max. P | 0.699958 |
Location | 11,450,240 – 11,450,334 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.57 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -21.12 |
Energy contribution | -20.62 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -1.55 |
Structure conservation index | 0.85 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11450240 94 + 22407834 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGCCGUAAAUCUCGAUGGUCUGCGUGGAUACUUUGGACACU ...(((.(((((((((((...(((....)))))))))))..(((((...(.(.((((((........)))).)).).)....))))).)))))) ( -27.20) >DroSec_CAF1 14067 85 + 1 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGUCGUAAAUCUUGACAGUCUGCAUGGUUACU--------- ((((((((((((((((((...(((....))))))))))))).............((((.......))))...)))).))))....--------- ( -22.90) >DroSim_CAF1 15046 85 + 1 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGCCGUAAAUCUCGACGGUCUGCAUGGUUACU--------- ...((((..(((((((((...(((....)))))))))))............(.((((((........)))).)).)..)..))))--------- ( -25.40) >DroEre_CAF1 14497 85 + 1 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUGGGGAAGUUGAAGGGGGUCGUAAAUCUCGACGGUCUGCAUGGACACU--------- ........((.(((((((...(((....)))))))))).))...(((.(.(.((..(((........)))..)).).).)))...--------- ( -23.60) >consensus AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGCCGUAAAUCUCGACGGUCUGCAUGGAUACU_________ ....((((((((((((((...(((....)))))))))))))....(((..((((........))))..))).)))).................. (-21.12 = -20.62 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:52 2006