Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,441,796 – 11,441,889 |
Length | 93 |
Max. P | 0.846526 |
Location | 11,441,796 – 11,441,889 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.64 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -21.66 |
Energy contribution | -22.70 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.43 |
Structure conservation index | 0.67 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11441796 93 + 22407834 UGUUGCCCUGUAAAGACAGGGAGAUAUUGCUCCUCGUCUGAGGCCAUUGCCUUAGCCCCCGAUU------CGAAUUCGAUUUCGAU------GUGGAUUUGGAUU (((..((((((....))))))..)))....(((..(.(((((((....))))))))..(((..(------((((......))))).------.)))....))).. ( -30.10) >DroSec_CAF1 5585 93 + 1 UGUUGCCCUGUAAAGACAGGGAGAUAUUGCUCCUCGUCUGAGGCCAUUGCCUUAGCCCCCGAUU------CGAAUUCGAUUUGGAU------GUGGAUUUGGAUU (((..((((((....))))))..)))....(((.((((((((((....)))))))...((((.(------((....))).))))))------).)))........ ( -31.60) >DroSim_CAF1 5780 93 + 1 UGUUGCCCUGUAAAGACAGGGAGAUAUUGCUCCUCGUCUGAGGCCAUUGCCUUAGUCCCCGAUU------CGAAUUCGAUUUGGAU------GUGGAUUUGAAUU (((..((((((....))))))..)))....(((.((((((((((....)))))))...((((.(------((....))).))))))------).)))........ ( -31.80) >DroEre_CAF1 5561 105 + 1 UGUCGCCCUGUUAAGACAGGGAGAUAUUGCUCCUCGUCUGAGGCCAAUGCCUUAGCCCCCGAUUCAAAUACGAAUUCGAUUUGGAUGUGGAUGUGGAUUUGGAUU ((((.((((((....)))))).))))....(((.((((((((((....)))))))...(((((((((((.((....)))))))))).)))))).)))........ ( -36.20) >DroYak_CAF1 5696 88 + 1 UGUUGCCCUGUAAAGACAGGGAGAUAUUGCUCCUCGUCGGAGGCCAUUGCCUU-----CGGAUUUCGAUCCGAAUUCGAUUUGG------------AUUUGGGUU (((..((((((....))))))..)))..........((((((((....)))))-----))).....(((((((((((.....))------------))))))))) ( -32.30) >consensus UGUUGCCCUGUAAAGACAGGGAGAUAUUGCUCCUCGUCUGAGGCCAUUGCCUUAGCCCCCGAUU______CGAAUUCGAUUUGGAU______GUGGAUUUGGAUU ((((.((((((....)))))).)))).......(((.(((((((....)))))))....)))........((((((((...............)))))))).... (-21.66 = -22.70 + 1.04)
Location | 11,441,796 – 11,441,889 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 85.64 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -16.60 |
Energy contribution | -17.24 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -1.99 |
Structure conservation index | 0.65 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11441796 93 - 22407834 AAUCCAAAUCCAC------AUCGAAAUCGAAUUCG------AAUCGGGGGCUAAGGCAAUGGCCUCAGACGAGGAGCAAUAUCUCCCUGUCUUUACAGGGCAACA ........(((..------.(((....)))..(((------..((.(((((((......))))))).)))))))).........((((((....))))))..... ( -25.70) >DroSec_CAF1 5585 93 - 1 AAUCCAAAUCCAC------AUCCAAAUCGAAUUCG------AAUCGGGGGCUAAGGCAAUGGCCUCAGACGAGGAGCAAUAUCUCCCUGUCUUUACAGGGCAACA .............------.(((...(((....))------).((.(((((((......))))))).))...))).........((((((....))))))..... ( -24.00) >DroSim_CAF1 5780 93 - 1 AAUUCAAAUCCAC------AUCCAAAUCGAAUUCG------AAUCGGGGACUAAGGCAAUGGCCUCAGACGAGGAGCAAUAUCUCCCUGUCUUUACAGGGCAACA ........(((..------.(((...(((....))------)....))).((.((((....)))).))....))).........((((((....))))))..... ( -22.50) >DroEre_CAF1 5561 105 - 1 AAUCCAAAUCCACAUCCACAUCCAAAUCGAAUUCGUAUUUGAAUCGGGGGCUAAGGCAUUGGCCUCAGACGAGGAGCAAUAUCUCCCUGUCUUAACAGGGCGACA ..............(((.....(((((((....)).)))))..((.((((((((....)))))))).))...)))......((.((((((....)))))).)).. ( -29.90) >DroYak_CAF1 5696 88 - 1 AACCCAAAU------------CCAAAUCGAAUUCGGAUCGAAAUCCG-----AAGGCAAUGGCCUCCGACGAGGAGCAAUAUCUCCCUGUCUUUACAGGGCAACA ..(((....------------..........(((((((....)))))-----))(((....)))...((((.((((......)))).))))......)))..... ( -25.30) >consensus AAUCCAAAUCCAC______AUCCAAAUCGAAUUCG______AAUCGGGGGCUAAGGCAAUGGCCUCAGACGAGGAGCAAUAUCUCCCUGUCUUUACAGGGCAACA ..(((......................((....))........(((....((.((((....)))).)).)))))).........((((((....))))))..... (-16.60 = -17.24 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:51 2006