Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,436,644 – 11,436,735 |
Length | 91 |
Max. P | 0.644105 |
Location | 11,436,644 – 11,436,735 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.85 |
Mean single sequence MFE | -39.08 |
Consensus MFE | -22.57 |
Energy contribution | -24.35 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.21 |
Mean z-score | -1.59 |
Structure conservation index | 0.58 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11436644 91 - 22407834 ---AGGA-----AGGCGGACCGGGAGCGGGACCGCC------GCCCAAUCCGUUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCCAACCUGCCGCUCUUCCC ---.(((-----((((((...(((((((((.(.(.(------(((((.((....)))))))).).))))(((....)))..)))))).......)))).))))). ( -44.90) >DroVir_CAF1 48454 92 - 1 -------------GGCGAAUCGUCAGUCGGUCCGCCAGCCCAGCCCAAUCCGUUGAUUUCUGCGCGACCGCCCUUCGGCAUGUUCCCCAAUCUACCAAUAUUUCC -------------((.((((........(((((((.((..((((.......))))....))))).))))(((....)))..)))).))................. ( -21.20) >DroPse_CAF1 469 99 - 1 GGCAGGAGUCGGAGUCGGGCCG---GCGGGUCCGCCC---AAUCCCAAUCCCCUGAUGGGCGCCCGUCCGCCCUUCGGCAUGUUCCCCAAUCUGCCGCUCUUCCC ((((((.((((((...((((.(---(((((..(((((---(.((..........)))))))))))))).)))))))))).((.....)).))))))......... ( -43.90) >DroSec_CAF1 434 91 - 1 ---AGGA-----AGGCGGACCGGGAGCGGGACCGCC------GCCCAAUCCGCUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCAAACCUGCCGCUCUUUCC ---.(((-----((((((...(((((((((......------.))).....(((((.(((((......))))).)))))..)))))).......)))).))))). ( -43.10) >DroYak_CAF1 439 91 - 1 ---AGGA-----GGGCGGACCGGGAGCGGGACCGCC------GCCCAAUCCGCUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCCAACCUGCCCCUCUUCCC ---.(((-----((((((..((((.(((....)))(------(((((.((....)))))))))))).)))))))))((((.(((....))).))))......... ( -46.60) >DroAna_CAF1 438 91 - 1 ---GGCC-----AGGUGAGGGGGGAGUAGGCCAGCC------ACCUAAUCCACUGAUGGGCGCCCGACCACCCUUCGGCAUGUUCCCCAACCUGCCGCUCUUCCC ---(((.-----((((..(((((((.((((......------.)))).))).((((.(((.(......).))).))))......)))).)))))))......... ( -34.80) >consensus ___AGGA_____AGGCGGACCGGGAGCGGGACCGCC______GCCCAAUCCGCUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCCAACCUGCCGCUCUUCCC .............(((((...(((((((((.............))).....(((((.(((((......))))).)))))..))))))....)))))......... (-22.57 = -24.35 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:47 2006