Locus 3919

Sequence ID 2L_DroMel_CAF1
Location 11,432,745 – 11,432,847
Length 102
Max. P 0.705029
window6179

overview

Window 9

Location 11,432,745 – 11,432,847
Length 102
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.10
Mean single sequence MFE -27.31
Consensus MFE -18.41
Energy contribution -21.36
Covariance contribution 2.94
Combinations/Pair 1.07
Mean z-score -1.53
Structure conservation index 0.67
SVM decision value 0.36
SVM RNA-class probability 0.705029
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11432745 102 + 22407834
-------------CAAUCCGU--AUCCGAAUAUGGCUGCAGUAGUUAUCUUAAUAGUUAUCAGGCGAUUGUUGUU-UUAGUUUUACUGCAGUUAGUGCGUGGAUCGGCCACUUUAUUC
-------------....(((.--(((((....((((((((((((....((.(((((..(((....)))..)))))-..))..)))))))))))).....))))))))........... ( -29.90)
>DroPse_CAF1 181989 85 + 1
-------------CAAUCCCA--GCCCCAAUAUGGCUGCAGUAGUUAUCUUAAUAGUUAUCAGACGAUUG--------GGUUGUUCUGCAGUUUGUGCGUGGAGCGGC----------
-------------.....((.--((.(((....((((((((....((.((((((.(((....))).))))--------)).))..))))))))......))).)))).---------- ( -23.40)
>DroSim_CAF1 158058 104 + 1
-------------CAAUCCGUAUAUCCGAAUAUGGCUGCAGUAGUUAUCUUAAUAGUUAUCAGGCGAUUGUUGUU-UUAGUUUUACUGCAGUUAGUGCGUGGAUCGGCCACUUUAUUC
-------------....(((...(((((....((((((((((((....((.(((((..(((....)))..)))))-..))..)))))))))))).....))))))))........... ( -27.60)
>DroEre_CAF1 158124 102 + 1
-------------GUAUCCGU--AUCCCAAUAUGGCUGCAGUAGUUAUCUUAAUAGUUAUCAGGCGAUUGUUGUU-UUAGUUCUACUGCAGUUAGUGCGUGGAUCGGCCACUUUAUUC
-------------((..(((.--(((((....((((((((((((....((.(((((..(((....)))..)))))-..))..))))))))))))....).)))))))..))....... ( -31.40)
>DroYak_CAF1 156266 116 + 1
CAGAACCCAAUUCCAAACCGU--AUCCGAAUAUGGCUGCAGUAGUUAUCUUAAUAGUUAUCAGGCGAUUGUUGUUUUUAGUUUUACUGCAGUUAGUGCGUGGAUCGGCCACUUUAUUC
.................(((.--(((((....((((((((((((.......(((((..(((....)))..))))).......)))))))))))).....))))))))........... ( -30.34)
>DroAna_CAF1 135848 95 + 1
-------------CAUACCCG--AUCCGAAUAUGGUUGCAAUAGUUAUCUUAAUAGUUAUCAGCGGAUUGUUGUU-CUCG-----GUGCAGUUAGUGCGUGGAGCGGCCACUUUAU--
-------------.......(--(((((....((((.((...((....)).....)).)))).))))))((((((-((..-----(..(.....)..)..))))))))........-- ( -21.20)
>consensus
_____________CAAUCCGU__AUCCGAAUAUGGCUGCAGUAGUUAUCUUAAUAGUUAUCAGGCGAUUGUUGUU_UUAGUUUUACUGCAGUUAGUGCGUGGAUCGGCCACUUUAUUC
.................(((...(((((....((((((((((((.......(((((..(((....)))..))))).......)))))))))))).....))))))))........... (-18.41 = -21.36 +   2.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:45 2006