Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,428,238 – 11,428,328 |
Length | 90 |
Max. P | 0.706424 |
Location | 11,428,238 – 11,428,328 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.80 |
Mean single sequence MFE | -32.15 |
Consensus MFE | -24.23 |
Energy contribution | -24.45 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.12 |
Mean z-score | -1.83 |
Structure conservation index | 0.75 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11428238 90 - 22407834 ------------------CUGCGGU--CUGACAACCACCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCAAG---CAACUAGCAACAUCG- ------------------(((.(((--(((.(.(((((((...))))))).)))))))))).......((.(((((((((....))).))))))(---(.....))....)).- ( -33.60) >DroSec_CAF1 145766 83 - 1 ------------------CUGCGGU--CUGACAACCACCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCU-CAAAUUGCCAGCAAG---CAACUAGCA------- ------------------(((.(((--(((.(.(((((((...))))))).))))))))))..........(((((((.-......).))))))(---(.....)).------- ( -32.40) >DroEre_CAF1 153374 89 - 1 ------------------CUGCGGU--CUGACAACCACCCUGUGGGUGGUAGCGGCCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCGGCAAG---CAACUAGCAACAU-G- ------------------(((.((.--(((.(.(((((((...))))))).)))).)))))....((((..(((((((((....))).))))))(---(.....))..)))-)- ( -29.30) >DroYak_CAF1 151203 92 - 1 ------------------CUGCGGU--CUGACAACCGCCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCGAGC-GCAACUAGCAACAUCA- ------------------(((.(((--(((.(.(((((((...))))))).))))))))))......(((.(((((((((....))).))))))((-.......))....)))- ( -33.50) >DroAna_CAF1 131222 87 - 1 ------------------CUGCGGU--CUAACAACCGCCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCAA------ACCAGCAACAUCA- ------------------(((.(((--((....(((((((...)))))))...))))))))......((..(((((((((....))).))))))------..)).........- ( -28.20) >DroPer_CAF1 175694 114 - 1 CUGUGUGUGUGGGGAGUGCUGUGGUCUCUAACAACCGCCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCGGCAACCAGAAACGAGCAAAAUGGU (((.((.(((.((.(((((((.(((((((....(((((((...))))))))).))))))))).........((((....))))))).)).))))))))................ ( -35.90) >consensus __________________CUGCGGU__CUGACAACCACCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCAAG___CAACUAGCAACAUCG_ ..................(((.(((..(((...(((((((...)))))))..)))))))))..........(((((((((....))).)))))).................... (-24.23 = -24.45 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:43 2006