Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,427,213 – 11,427,312 |
Length | 99 |
Max. P | 0.688362 |
Location | 11,427,213 – 11,427,312 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 85.54 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -16.12 |
Energy contribution | -16.76 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.72 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11427213 99 + 22407834 ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGCAGAUUAUCAAUGGAUUCUACGAAUCUAA-AAUGCAGCCAUACAAAAUGAAUGA-----------AAUAU ....((((((((((((....((((....)))).(((.((....))..)))..)))))))).)))).....-....((..(((.....)))..)).-----------..... ( -19.70) >DroSec_CAF1 144761 111 + 1 ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGUAGAUUAUCAAUGGACUCUACGAAUCUAAAAAUGCAGCCACACAAAAUGAAUGGCAGGCAGGCAGAAUGU ((((((((((((((((....((((....)))).(((.((....))..)))..)))))))).))))(((.....(((.((((..(.....)..))))..)))...))))))) ( -29.80) >DroSim_CAF1 152279 100 + 1 ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGUAGAUUAUCAAUGGACUCUACGAAUCUAAAAACGCAGUCACACAAAAUGAAUGA-----------AAUAU ....((((((((((((....((((....)))).(((.((....))..)))..)))))))).))))..........((.(((.......))).)).-----------..... ( -21.50) >DroEre_CAF1 152231 99 + 1 ACAUUUCGAGUGUCCAGCAAAGACACUUGUCUUGAUUUCACUAGACUAUCAAUGGAGUCUACGAAUCUAAAAUGGCAGCAAUACGACUUGAAUGA------------AUAU .((((.(((((((...((.(((((....)))))(((((...((((((........)))))).)))))..........))...)).))))))))).------------.... ( -22.00) >DroYak_CAF1 150212 100 + 1 ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUCCACUAGACUAUCAAUGGAUUCUGGGAAUCUAUAAAUGCAGCGAUACAAAGUGAAUGA-----------AAUAU ..(((((.((((((((....((((....)))).(((...........)))..)))))))).))))).............................-----------..... ( -18.50) >consensus ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGUAGAUUAUCAAUGGACUCUACGAAUCUAAAAAUGCAGCCAUACAAAAUGAAUGA___________AAUAU ....((((((((((((....((((....)))).(((.((....))..)))..)))))))).)))).............................................. (-16.12 = -16.76 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:39 2006