Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,426,753 – 11,426,862 |
Length | 109 |
Max. P | 0.546740 |
Location | 11,426,753 – 11,426,862 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -17.36 |
Consensus MFE | -10.92 |
Energy contribution | -11.32 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.57 |
Structure conservation index | 0.63 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11426753 109 - 22407834 AAAUCCACCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUCGAAAAAGCUGAAAAAGAUCCCAUGGGCCCACAACACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA .........((((((.((......))......((((.(((((.......))))).))))....))))))........................................ ( -17.80) >DroSec_CAF1 144306 100 - 1 AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAACCUAUUUCGAA---------AAAGCUCCCAUGGGCCCACAAAACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA .........((((((.((.((.(((...((......))...)))---------...)).))..))))))........................................ ( -15.00) >DroSim_CAF1 151811 109 - 1 AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUCGAAAAGGCUGAAAAAGCUCCCAUGGGCCCACAAAACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA .........((((((.((...............((......))...((((.....)))).)).))))))........................................ ( -17.30) >DroEre_CAF1 151798 97 - 1 AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUGGAAAAGGCUG------CUC-CAUGGGCCCACAAAAC-----CCAACCAAAUAUACAAUUUAAAUUGCA .........((((((.((.((((((((.((......)).))))).....))------).)-).))))))........-----........................... ( -23.20) >DroYak_CAF1 149785 98 - 1 AAAUCCUCCAGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUUGAAAAAGCUG------CUCCCAUGGGCCCACAAAAC-----CCAACCAAAUAUACAAUUUAAAUUGCA ..........(((((.((.(((.......((((......))))......))------).))..))))).........-----........................... ( -13.52) >consensus AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUCGAAAAAGCUG__AAAGCUCCCAUGGGCCCACAAAACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA .........((((((.((......)).......((......))....................))))))........................................ (-10.92 = -11.32 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:38 2006