Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,425,147 – 11,425,246 |
Length | 99 |
Max. P | 0.602355 |
Location | 11,425,147 – 11,425,246 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.37 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -14.06 |
Energy contribution | -13.66 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.28 |
Mean z-score | -1.85 |
Structure conservation index | 0.49 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11425147 99 - 22407834 UGCAACCGGGUGGGUCCUCCGCAGCUCGUACCCCUUCGAUGCUUCGAUGCACCGAU--------CCUUCGAUCCGCAACUCAGUUAGAUCAUCAAAAUGAUCUAGUU (((.....((((.(((....(.((((((........))).))).)))).))))(((--------(....)))).)))......(((((((((....))))))))).. ( -27.40) >DroSec_CAF1 142678 86 - 1 UGCAAUUGGGUGGGUCCUCC-----UCGAACCCCUUCGAUG--------CGCCGAU--------CCUCCGAUCCGCAGUUCAGUUAGAUCAUCAAAAUGAUCUAGUU (((.((((((.(((((..((-----(((((....))))).)--------.)..)))--------))))))))..)))......(((((((((....))))))))).. ( -25.90) >DroSim_CAF1 150075 91 - 1 UACAAUUGGGUGGGUCCUCCGCAGCUCGUACCCCUUCGAUG--------CUCCGAU--------CCUCCGAUCCGCAAUUCAGUUAGAUCAUCAAAAUGAUCUAGUU .......((((.((.....((.((((((........))).)--------)).))..--------...)).)))).........(((((((((....))))))))).. ( -24.20) >DroEre_CAF1 150195 105 - 1 UGCAACUGGGUGGGUCCUCCGCAGCUCGCAUGCCCCCCAUUUCCCGCUGCUCCCAUGCUCCUG-CCUCCGAUGCCCAG-CCAGUUAGAUCAUCAAAAUGAUCUAGUU ...((((((.(((((.....((((...(((((.....((........))....)))))..)))-).......))))).-))))))(((((((....))))))).... ( -33.00) >DroYak_CAF1 147530 106 - 1 UGCAACUGGGUGGGUCCUCCGCAGCUUGUACCCCUCCAAUGCGCCGAUCCUCCGAUGCUUCGAUACUCCGAUGCCCAG-GCAGUUAGAUCAUCAAAAUGAUCUAGUU (((..(((((((((((...((((..(((........)))))))..)))))..(((....)))..........))))))-))).(((((((((....))))))))).. ( -31.80) >consensus UGCAACUGGGUGGGUCCUCCGCAGCUCGUACCCCUUCGAUG___CG_U_CUCCGAU________CCUCCGAUCCGCAG_UCAGUUAGAUCAUCAAAAUGAUCUAGUU ......((((.((((.(..........).)))).)))).............................................(((((((((....))))))))).. (-14.06 = -13.66 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:37 2006