Locus 391

Sequence ID 2L_DroMel_CAF1
Location 1,207,020 – 1,207,112
Length 92
Max. P 0.982347
window621

overview

Window 1

Location 1,207,020 – 1,207,112
Length 92
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 79.17
Mean single sequence MFE -28.62
Consensus MFE -19.96
Energy contribution -22.53
Covariance contribution 2.56
Combinations/Pair 1.07
Mean z-score -2.34
Structure conservation index 0.70
SVM decision value 1.91
SVM RNA-class probability 0.982347
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1207020 92 - 22407834
----------------CAUUUGACCCUCCAAUUGGAUUCCACUGGCUUCUGACAUUUGCCCAUUUGGUAGUUUUUCGGGCUCCGAAUGGAGGGUUCCAAUGAUAUGCU
----------------((((.(((((((((.(((((..((..((........)).(((((.....)))))......))..))))).)))))))))..))))....... ( -30.80)
>DroSec_CAF1 2734 92 - 1
----------------CAUUUGACCCUCCAAUUGGAUUCCACUGGCUUCUGACAUUUGCCCAUUUGGCAGUUUUUCGGACUCCGAACGGAGGGUUCCAAUGAUAUGCU
----------------((((.((((((((..(((((.(((..((........)).(((((.....)))))......))).)))))..))))))))..))))....... ( -30.80)
>DroSim_CAF1 2725 108 - 1
ACUUAUGGAGGCUCCCCAUUUGACCCUCCAAUUGGAUUCCACUGGCUUCUGACAUUUGCCCAUUUGGCAGUUUUUCGGACUCCGAACGGAGGGAUCCAAUCAUAUGCU
.....((((((.((.......)).))))))((((((((((.......(((((...(((((.....)))))....))))).(((....)))))))))))))........ ( -36.40)
>DroYak_CAF1 2784 79 - 1
----------------CAUUUGACCCUCCGAUUGGAUUCCGCUGGAUUCUGACAUUUGCCCAGUUGGCAGUUUUUGGGGCUCC-------------CACUGAUAUGUC
----------------.....((.((.(((((..((.(((...))).))..)...(((((.....)))))...)))))).)).-------------............ ( -16.50)
>consensus
________________CAUUUGACCCUCCAAUUGGAUUCCACUGGCUUCUGACAUUUGCCCAUUUGGCAGUUUUUCGGACUCCGAACGGAGGGUUCCAAUGAUAUGCU
................((((.((((((((..(((((.(((..((........)).(((((.....)))))......))).)))))..)))))).)).))))....... (-19.96 = -22.53 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:48 2006