Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,417,540 – 11,417,634 |
Length | 94 |
Max. P | 0.921475 |
Location | 11,417,540 – 11,417,634 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.76 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -21.78 |
Energy contribution | -22.12 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.15 |
Mean z-score | -1.62 |
Structure conservation index | 0.76 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11417540 94 - 22407834 ----------------AAACACUUUGU----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA ----------------..(((((....----..))))).....((((((((((((((.....)))))....))))))))).........((((..((((...))))..)).)). ( -28.20) >DroSec_CAF1 135037 110 - 1 AUUCCCUCUUUCACAUAAACACUUUGU----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUAUCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA ............((((..(((((....----..))))).....((((((((((((((.....))))....)))))))))))))).....((((..((((...))))..)).)). ( -29.20) >DroSim_CAF1 141838 110 - 1 UUUCCCUUUUUCACUUAAACACUUUGU----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA ..................(((((....----..))))).....((((((((((((((.....)))))....))))))))).........((((..((((...))))..)).)). ( -28.20) >DroEre_CAF1 142638 98 - 1 CCUCU------------AGCACUUUGU----UCAGUGUACUUGCGGCAGGUCGUAUCUCACGGAUACCCUCGACUUGCCGAUGUCUGCAGCCGCUUGUCCCUGACACUUGAGCA .....------------.......(((----(((((((((...((((((((((((((.....)))))....)))))))))..))..((....)).........)))).)))))) ( -30.30) >DroYak_CAF1 139570 110 - 1 UUUCUCUUUUCCAGUUAAGCACUUUGC----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCUGUGCUUGUAGCCGCUUGUCCCUGACACUUGAGCA ........................(((----(((((((((..(((((((((((((((.....)))))....)))))))).(.((.....)))))..)).....)))).)))))) ( -31.40) >DroAna_CAF1 120814 87 - 1 ----U------------AGCCUUCGGUUCUGUGAGUGUACUUCAAGCAGGUCGUAUCUCACGGAUACC-UCGACUU----------CUAACAGCUUGUCCCUGACACUCGGGCC ----.------------.......(((((...((((((....(((((((((((((((.....))))).-..)))))----------......)))))......))))))))))) ( -24.40) >consensus _UUCU___________AAACACUUUGU____UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA ..................(((((..........))))).....((((((((((((((.....)))))....)))))))))............(((((((...))))....))). (-21.78 = -22.12 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:26 2006