Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,416,478 – 11,416,574 |
Length | 96 |
Max. P | 0.766541 |
Location | 11,416,478 – 11,416,574 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 76.34 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -11.46 |
Energy contribution | -13.02 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.90 |
Structure conservation index | 0.59 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11416478 96 + 22407834 ---CAGUCCCACCCCAUUUCAUGCCCAUCCUCGGACAGGUUGGGAUACCAUACCCAUACCCAUACC------CAAGCUC--AUGCCAUCUCCCGAUGGAUGAAAACA ---......................(((((((((...(((((((........)))).)))......------...((..--..))......)))).)))))...... ( -22.10) >DroSec_CAF1 133989 96 + 1 ---CAGUCCCACCCCAUUUCAUGCCCAUCCUCGGACAGGUUGGGAUACCAUACCCAUACCCAUACC------CAAGCCC--AUGCCAUCUCCCGAUGGAUGAAAACA ---......................(((((((((...(((((((........)))).)))......------...((..--..))......)))).)))))...... ( -20.90) >DroSim_CAF1 140779 102 + 1 ---CAGUCCCACCCCAUUUCAUGCCCAUCCUCGGACAGGUUGGGAUACCAUACCCAUACCCAUACCCAUAGCCAAGCCC--AUGCCAUCUCCCGAUGGAUGAAAACA ---......................(((((((((...(((((((........)))).)))...............((..--..))......)))).)))))...... ( -20.90) >DroAna_CAF1 119951 93 + 1 AGCCUGCUCCUCCCCCACCCACGCCCCU------------GGCAAUACCAUACCCAUGCCCAUCUU--UAGACAGGUCGAAAUACCAGCUCGCGAUGGAUGAAAACA ...............((.((((((....------------((((............))))......--......(((......))).....))).))).))...... ( -13.70) >consensus ___CAGUCCCACCCCAUUUCAUGCCCAUCCUCGGACAGGUUGGGAUACCAUACCCAUACCCAUACC______CAAGCCC__AUGCCAUCUCCCGAUGGAUGAAAACA ................((((((.((((.(((.....))).))))........................................(((((....)))))))))))... (-11.46 = -13.02 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:21 2006