| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,408,006 – 11,408,103 |
| Length | 97 |
| Max. P | 0.658263 |
| Location | 11,408,006 – 11,408,103 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.90 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -19.76 |
| Energy contribution | -19.56 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11408006 97 + 22407834 AAAUCU-UGGAAGGGGGGGCUUGGCAAAAAUGUUAGUCGUGCAA--------AUCUUCGGGGAAUCUCGAAGAAUAUGGGGUACCAUAUUUUUCCAUAUGUGUGUG ...(((-(.(((((....((.((((..........)))).))..--------.))))).)))).....(((((((((((....)))))))))))............ ( -27.90) >DroSec_CAF1 125446 95 + 1 AAAUCU-UGGGAGGGGG--UUUGGCAAAAAUGUUAGUCGUGCAA--------AUCUUCGGGGAAUCUCGAAGAAUAUGGGGUACCAUAUUUUUCCAUAUGUGUGUG ...(((-(.(((((..(--(.((((..........)))).))..--------.))))).)))).....(((((((((((....)))))))))))............ ( -26.30) >DroSim_CAF1 132209 94 + 1 AAAUCU-UGGAAGGGGG--U-UGGCAAAAAUGUUAGUCGUGCAA--------AUCUUCGGGGAAUCUCGAAGAAUAUGGGGUACCAUAUUUUUCCAUAUGUGUGUG ......-(((((((((.--.-(((((....)))))..)......--------.((((((((....)))))))).(((((....))))))))))))).......... ( -25.80) >DroEre_CAF1 132963 93 + 1 AAAACU-UAGGAGC-GG---UUGUCCAAGAUGUUGGUCGUGCAA--------AUCUUCGGGGAAUCUCGAAGAAUAUGGGCUACCAUAUUUUUCCAUACGUGUGCG ......-.....((-((---((.((((((((.(((......)))--------))))).))).))))..(((((((((((....))))))))))).........)). ( -26.70) >DroYak_CAF1 129838 102 + 1 AAAACUAUGGAAGG-GG---UUGGUCAAAAUGUUAGUCGUGCAAAUGUUCAAAUCUUCGGGGAAUCUCGAGGAAUAUGGGGUACCAUAUUUUUCCAUAUGUGUGUG ...(((((((((((-(.---(((..((...(((.......)))..))..))).((((((((....)))))))).(((((....))))))))))))))).))..... ( -25.90) >consensus AAAUCU_UGGAAGGGGG___UUGGCAAAAAUGUUAGUCGUGCAA________AUCUUCGGGGAAUCUCGAAGAAUAUGGGGUACCAUAUUUUUCCAUAUGUGUGUG .......((((((........................................((((((((....))))))))((((((....)))))).)))))).......... (-19.76 = -19.56 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:18 2006