| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,406,821 – 11,406,911 |
| Length | 90 |
| Max. P | 0.519303 |
| Location | 11,406,821 – 11,406,911 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -14.73 |
| Energy contribution | -15.82 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11406821 90 - 22407834 ---AUUGCCUGCUCGUACAGUUCGUACAGUUCGAUUGACAUGCAAAGCGAAUUAGCUGGCCAUAAAUCGAAGCCAGCC-CAAGUGGAGUUAAAA ---.......((((((((.....))))((((((.(((.....)))..)))))).((((((...........)))))).-......))))..... ( -21.30) >DroPse_CAF1 152338 87 - 1 ACUCUAGACCACUCGAA-------UCCACUUCGAUUGACAUGCAAAGCGAAUUAGCUGGCCAUAAAUCGGAGCCAGCCCCAAGUGGAGUUAAAA ((((((...((.(((((-------.....))))).)).................(((((((........).))))))......))))))..... ( -20.50) >DroEre_CAF1 131867 81 - 1 ---AUGGCCAGCUCGUA---------CAGUUCGAUUGACAUGCAAAGCGAAUUAGCUGGCCAUAAAUCGUAGCCAGCC-CAAGUGGAGUUAAAA ---((((((((((....---------.((((((.(((.....)))..))))))))))))))))...........((((-(....)).))).... ( -24.70) >DroYak_CAF1 128478 81 - 1 ---AUGGCCUGCUCGUA---------CAGUUCGAUUGACAUGCAAAGCGAAUUAGCUGGCCAUAAAUCGUAGCCAGCC-CAAGUGGAGUUAAAA ---.(((((..((....---------.((((((.(((.....)))..)))))).((((((.((.....)).)))))).-..))..).))))... ( -20.70) >DroAna_CAF1 111880 72 - 1 ----------------ACAG-----CCAGUUCGAUUGACAUGCAAAGCGAAUUAGUUGGCCAUAAAUCGGGGCCAGCC-CAAGUGGAGUUAAAA ----------------.(((-----(.((((((.(((.....)))..)))))).)))).((((......(((....))-)..))))........ ( -17.50) >DroPer_CAF1 152113 84 - 1 ---CUAGACCACUCCAA-------UCCACAUCGAUUGACAUGCAAAGCGAAUUAGCUGGCCAUAAAUCGGAGCCAGCCCCAAGUGGAGUUAAAA ---.....(((((.(((-------((......))))).................(((((((........).))))))....)))))........ ( -20.60) >consensus ___AUAGCCCGCUCGUA________CCAGUUCGAUUGACAUGCAAAGCGAAUUAGCUGGCCAUAAAUCGGAGCCAGCC_CAAGUGGAGUUAAAA ........(((((..............((((((.(((.....)))..)))))).((((((...........))))))....)))))........ (-14.73 = -15.82 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:17 2006