Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,206,598 – 1,206,756 |
Length | 158 |
Max. P | 0.978660 |
Location | 1,206,598 – 1,206,716 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.43 |
Mean single sequence MFE | -41.98 |
Consensus MFE | -34.54 |
Energy contribution | -35.14 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -2.15 |
Structure conservation index | 0.82 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1206598 118 + 22407834 GGUCGGCUGCUUUUGGCCUU-UUCCCCCGGUGUUUGUCUUGGCCACUGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGUGCUAGCCAAUACA ....((((((..........-......((((.((..(((.(((....))))))..)).)))).((((...(((((.((((((((.....))))))))))))))))))).))))...... ( -39.70) >DroSec_CAF1 2311 118 + 1 GGUCGCCUGCUUUUGGCCUU-UUCCCCCGGUGUUUGUCUUGGCCACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGUGCUAGCCAAUACA ............(((((...-......((((.((..(((.(((....))))))..)).))))...((((((....(((((((((.....))))))))).....)))))).))))).... ( -39.70) >DroSim_CAF1 2302 118 + 1 GGUCGCCUGCCUUUGGCCUU-UUUCCCCGGUGUUUGUCUUGGCCACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGUGCUAGCCAAUACA (((.....))).(((((...-......((((.((..(((.(((....))))))..)).))))...((((((....(((((((((.....))))))))).....)))))).))))).... ( -41.10) >DroEre_CAF1 2236 119 + 1 GCUCGGCUGCUUUUGGCCCUUUUCCCUCGCUGUUUGUCUUGGCCACGGCCAGAUGAGAGCCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUUCGGGCUGGCCAAUACA ....((((......(((((....((((((((.((..(((.(((....))))))..)))).)))).))...((...(((((((((.....)))))))))....)))))))))))...... ( -45.10) >DroYak_CAF1 2387 119 + 1 GGUCGGCUGCUUUUGGCCUUUUUCCCCCGCUGUUUGUCUUGGCCACGGCCAGCUGAGUGCCGAGCAGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUUCGGGCUGGCCAAUACA ((((((((......)))).......(((((((((((...((((....))))((.....))))))))))..((...(((((((((.....)))))))))....)))))..))))...... ( -44.30) >consensus GGUCGGCUGCUUUUGGCCUU_UUCCCCCGGUGUUUGUCUUGGCCACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGUGCUAGCCAAUACA ............(((((..........((((.(((((((.(((....)))))))))).))))...((((((....(((((((((.....))))))))).....)))))).))))).... (-34.54 = -35.14 + 0.60)
Location | 1,206,637 – 1,206,756 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.32 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -17.35 |
Energy contribution | -17.47 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -2.30 |
Structure conservation index | 0.46 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.754747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1206637 119 + 22407834 GGC-CACUGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGUGCUAGCCAAUACAUAAUGCAAUAGAUAUGGCCAAAUGGCUGCUAAGAAGGCAG ...-..(((((...........(.((((((((....(((((((((.....))))))))).....)))))).)))..............(((....((((....)))).)))....))))) ( -32.60) >DroSec_CAF1 2350 119 + 1 GGC-CACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGUGCUAGCCAAUACAUACUGCAAUAGCUAUGGCCAAAUGGCUGCUAAGAAGGCAG (((-((.(((((....((......(((((((((((((((((((((.....)))))))))......((....)))))).)))))))).....)).)))))...)))))(((.....))).. ( -41.40) >DroSim_CAF1 2341 119 + 1 GGC-CACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGUGCUAGCCAAUACAUAAUGCAAUAGAUAUGGCCAAAUGGCUGCUAAGAAGGCAG (((-(((((...........))).(((.(((((((((((((((((.....)))))))))......((....)))))).)))).)))........)))))......(((((.....))))) ( -33.90) >DroEre_CAF1 2276 97 + 1 GGC-CACGGCCAGAUGAGAGCCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUUCGGGCUGGCCAAUACAUAAUGCAAUAGC----------------------AGGCAG .((-(..((((((.((((((((....))).......(((((((((.....)))))))))..)))))..)))))).........(((....))----------------------)))).. ( -37.10) >DroYak_CAF1 2427 119 + 1 GGC-CACGGCCAGCUGAGUGCCGAGCAGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUUCGGGCUGGCCAAUACAUAAUGCAAUAGCUGUGGGGCAAUGGCUGCUAAAAAGGCAG .((-(..((((((((.(.(((...))).).(((...(((((((((.....)))))))))....)))))))))))....((((..((....)))))).))).....(((((.....))))) ( -42.60) >DroPer_CAF1 2767 110 + 1 GGCCCACGUGCGGAUGC-------GUGAUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUUUAGGCUGUCCAUUGUU---UGCGAGUGCCAGAGCGGGACGACUAGUGUGUGGCCAG ((((.(((..(((((((-------.(((...(((((.((((((((.....)))))))))))))))).)).))))......---.....((.((.....)).)).....)..))))))).. ( -38.10) >consensus GGC_CACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAAUUUUGCAGCAUAAUUCCGGGCUAGCCAAUACAUAAUGCAAUAGCUAUGGCCAAAUGGCUGCUAAGAAGGCAG ........(((.............(((.(((((((((((((((((.....)))))))))........(....))))).)))).))).........((........))........))).. (-17.35 = -17.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:47 2006