Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 174,161 – 174,264 |
Length | 103 |
Max. P | 0.911606 |
Location | 174,161 – 174,264 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 68.00 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -6.33 |
Energy contribution | -6.65 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.50 |
Mean z-score | -2.22 |
Structure conservation index | 0.27 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 174161 103 - 22407834 UUGUCUAUUGGUACAUACAUAUGUA-GUACAUAAACGCAAAUAUACACCUGGGA-------ACGUU-UUACUCCAAGCUGUAAAGGGUCUUUACUAAAGACUCUAGAUUAUU ((((......((((.(((....)))-))))......))))...((((.((.(((-------.....-....))).)).)))).((((((((.....))))))))........ ( -21.60) >DroSec_CAF1 20828 112 - 1 UUGUCUAUAGGCACAUAAGUACAUAUGUGCAUAUACACAAAUAUACGCCUGGGAACUGGGAACCUUUCAACUCCAAGCUGUAAAGAGUCUUUACUAAAGACUCUACAUUUUU ((((.((((.(((((((......))))))).)))).))))...((((.((.(((..((..(...)..))..))).)).)))).((((((((.....))))))))........ ( -30.90) >DroSim_CAF1 20948 104 - 1 UUGUCUAUA-GCACAUAUGUACAAAUGUGC------ACAAAUAUACGUCUGGAAACUGGGAACCUUUCAACUCCAAGCUGUAAAGAGUCUUUACUAAAGACUCUACAUUUU- .........-((((((........))))))------.......((((..((((...((..(...)..))..))))..).))).((((((((.....)))))))).......- ( -24.50) >DroEre_CAF1 23537 99 - 1 GUGUUUGUAGGUACAUAUGU------------AUACACAAAUAUACGCCAGGGCUUUUUGAACGAUU-UACUUCAAGCUGUAAAGAAUUUUUACUAAACCCUCUUAAUAAUU ((((((((..((((....))------------))..)))))))).....((((.((..((((...((-(((........))))).....))))..)).)))).......... ( -17.60) >DroYak_CAF1 21499 93 - 1 GUGUUUGUAGGUACAAAUUU------------AUACACAAAUAUACGCCUGGAAACUUUGAACGACU-UACUUCGAGUUGUAAAGAGUCUUUAGUGAGUCUU-----UAAU- ..((((.(((((....((((------------......))))....))))).)))).(((((.((((-((((..((.((.....)).))...))))))))))-----))).- ( -21.60) >consensus UUGUCUAUAGGUACAUAUGUA___A_GU_C__AUACACAAAUAUACGCCUGGGAACUGGGAACGUUU_UACUCCAAGCUGUAAAGAGUCUUUACUAAAGACUCUACAUUAUU ...........................................(((((.((((..................)))).)).))).(((((((((...)))))))))........ ( -6.33 = -6.65 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:56 2006