| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,405,192 – 11,405,291 |
| Length | 99 |
| Max. P | 0.681606 |
| Location | 11,405,192 – 11,405,291 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 84.13 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -17.01 |
| Energy contribution | -18.35 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.25 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11405192 99 + 22407834 -------UAAAAAACGAACAUGGAAAUUAUUGUCGGUCUCUA---CACUUGAGG---CCGAUAAAAGUUUUUCGAUAGUGGCAGUGAAAAUGCCACAAACAGCUCAUUACAA -------.......(((.....((((((.(((((((((((..---.....))))---))))))).)))))))))...((((((.......))))))................ ( -31.00) >DroSec_CAF1 122653 99 + 1 -------UAAAAAACGAACAUGGAAAUUAUUGUCGGUCUCUC---CACUUGAGG---CCGAUAAAAGUUUUUCGAUAGUGCCAGUGAAAAUGCCACAAACAGCUCAUUACAA -------.......(((.....((((((.(((((((((((..---.....))))---))))))).)))))))))...(((.((.......)).)))................ ( -23.90) >DroSim_CAF1 129444 99 + 1 -------UAAAAAACGAACAUGGAAAUUAUUGUCGGUCUGUC---CACUUGAGG---CCGAUAAAAGUUUUUCGAUAGUGGCAGUGAAAAUGCCACAAACAGCUCAUUACAA -------.......(((.....((((((.((((((((((...---......)))---))))))).)))))))))...((((((.......))))))................ ( -26.80) >DroEre_CAF1 130113 99 + 1 -------UAAAAAACGAACAUGGAAAUUAUUGUCGGUCUCUC---CACUUGAGG---CCGAUAAAAGCUUUUCGAUAGUGGCAGUGAAAAUGCCACAAACAGCUCAUUACAA -------........((.(.((((((((.(((((((((((..---.....))))---))))))).)).))))))...((((((.......)))))).....).))....... ( -29.90) >DroAna_CAF1 110334 109 + 1 CAAAAAAAAAAAAACGAACAUGGAAAUUAUUGUCGGGCUCUCACCGACCCGGAG---ACGAUAAAAGUUUCUCGAUAGUGGCAGUGAAAAUGCCACAAACAGCUCAUUACAA ...............((.(..(((((((.((((((((.((.....)))))(...---.)))))).))))))).....((((((.......)))))).....).))....... ( -27.30) >DroPer_CAF1 151015 92 + 1 -----------GGCCGAACAUGGAAAUUAUUGUUGGG---------GCUCGGGCCCCCCGAUAAAGCCGCCUCGAUAGUGGCAGUGGAAAUGCCACAAACAGCUCAUUACAA -----------((((((...(((...((((((..(((---------((....))))).))))))..)))..)))...((((((.......)))))).....)))........ ( -30.30) >consensus _______UAAAAAACGAACAUGGAAAUUAUUGUCGGUCUCUC___CACUUGAGG___CCGAUAAAAGUUUUUCGAUAGUGGCAGUGAAAAUGCCACAAACAGCUCAUUACAA ..............(((.....((((((.(((((((((((..........))))...))))))).)))))))))...((((((.......))))))................ (-17.01 = -18.35 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:13 2006