Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,400,268 – 11,400,359 |
Length | 91 |
Max. P | 0.635469 |
Location | 11,400,268 – 11,400,359 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 86.48 |
Mean single sequence MFE | -37.88 |
Consensus MFE | -28.68 |
Energy contribution | -28.20 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.21 |
Mean z-score | -1.66 |
Structure conservation index | 0.76 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11400268 91 + 22407834 AUGGA--------------GGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGAGACGAAUGAACAGUCCAGUCGGUUGGCAUUCAGAGGUAAUGAGCGUUCCAC .((((--------------((.....))))))((((.((.(((..((....(....)(((((..(((.((....))))).)))))...))..))).)).)))).. ( -30.50) >DroSec_CAF1 117646 104 + 1 AUGGAGUUGGCCCAGAGGAGGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGACACGGAUGAACGG-CCAGUCGGUUGGCAUCCAGAAGUAAUGAGCGUUCCAC ...((.(..((((...(((((.....)))))....))))....).))...(((((..(((((..(((-((....))))).)))))....((.....))))))).. ( -37.20) >DroSim_CAF1 124474 105 + 1 AUGGAGUUGGCCCAGAGAAGGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGAGACGGAUGAACAGUCCAGUCGGUUGGCAUCCAGAAGUAAUGAGCGUUCCAC .(((((..(.(((......)).).)..)))))((((.((.(((..((....(....)(((((..(((.((....))))).))))).))....))).)).)))).. ( -33.80) >DroEre_CAF1 125142 105 + 1 AUGGAGCUGGCCCAGAGCAGGAGGCUCCUCCUGGAGGGUAUGUGGUCAGAGGGAGACGGAUGGACAGCCCAGUCGGCUGGCAUCCAGGAGUAAUGAGCGUUCCAC .((((((..((((....((((((....))))))..))))....(.(((...(....)(((((..(((((.....))))).)))))........))).))))))). ( -45.10) >DroYak_CAF1 121381 105 + 1 AUGGAGUUGGCCCAGAGGAGGAGACUCCUCCAGGAGGGUGUGCGAUCAGAGGGAGACGGAUGAACAGCCCAGUCGGCUGGCAUCCACAAGUAAUGAGCGUUCCAC .((((....((((.((((((....)))))).....))))..(((.(((...(....)(((((..(((((.....))))).)))))........))).))))))). ( -42.80) >consensus AUGGAGUUGGCCCAGAGGAGGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGAGACGGAUGAACAGCCCAGUCGGUUGGCAUCCAGAAGUAAUGAGCGUUCCAC .((((....((((......((((....))))....))))..(((.(((...(....)(((((..(((.((....))))).)))))........))).))))))). (-28.68 = -28.20 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:01 2006