Locus 3895

Sequence ID 2L_DroMel_CAF1
Location 11,397,353 – 11,397,444
Length 91
Max. P 0.552736
window6128

overview

Window 8

Location 11,397,353 – 11,397,444
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.12
Mean single sequence MFE -22.81
Consensus MFE -10.75
Energy contribution -11.67
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -1.93
Structure conservation index 0.47
SVM decision value 0.04
SVM RNA-class probability 0.552736
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11397353 91 - 22407834
UAAUAUGCC--AACGAUCGU-UGUCGAGAAUACAGAUACAAACCAAAAAGUGCAUUUAGUAAAUAAGCUAAAUGCGACGCAA--------------UCGAAGGUCUCU
......(((--..((((.((-.(((................((......))(((((((((......)))))))))))))).)--------------)))..))).... ( -21.40)
>DroSec_CAF1 114304 90 - 1
UAAUAUGCC--AGCGAUCGU-UGUCGGGAAUACAGAUACAAACCAA-AAGUUCAUUUAGUAAAUAAGCUAAAUACGACGCAA--------------UCGAAGGUCUCU
......(((--..((((.((-.((((.((((...............-..))))(((((((......))))))).)))))).)--------------)))..))).... ( -18.53)
>DroSim_CAF1 121725 90 - 1
UAAUAUGCC--AGCGAUCGU-UGUCGGGAAUACAGAUACAAACCAA-AAGUGCAUUUAGUAAAUAAGCUAAAUGCGACGCAA--------------UCGAAGGUCUCU
......(((--..((((.((-.(((((...............))..-....(((((((((......)))))))))))))).)--------------)))..))).... ( -23.96)
>DroEre_CAF1 122219 88 - 1
UAAUAUGCC--AGCGAUCGU-UGUCGGGAAUGGGGAUACAACCCA---AGUGCAUUUAGUAAAUAAGCUAAAUGCGAAGCCG--------------UCGAAGGUCUCU
.........--((.((((.(-((.(((...((((.......))))---..((((((((((......))))))))))...)))--------------.))).)))).)) ( -29.20)
>DroYak_CAF1 118187 88 - 1
UAAUAUGCC--AGCGAUCGU-UGUCGGGAAUAAGGACACAGACCA---AGUGCAUUUAGUAAAUAAGCUAAAUGCGAGGCAA--------------UCGAAGGUCUCU
......(((--..((((...-((((((...............)).---..((((((((((......)))))))))).)))))--------------)))..))).... ( -22.36)
>DroAna_CAF1 103324 106 - 1
UAAUAUCCCCGAGAGAUCGAUCGUCCAG-AUACCGAUUCAGGUCCA-AUAUCCUCUUAGCAAGUACACUUAACAAGGACCAAGAGGGUUUUCCUCCUUGAAGGUCCCC
..........(((((....(((.....)-))(((......)))...-.....)))))..................(((((..(((((......)))))...))))).. ( -21.40)
>consensus
UAAUAUGCC__AGCGAUCGU_UGUCGGGAAUACAGAUACAAACCAA_AAGUGCAUUUAGUAAAUAAGCUAAAUGCGACGCAA______________UCGAAGGUCUCU
..............((((((..(((.........)))))...........((((((((((......)))))))))).........................))))... (-10.75 = -11.67 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:58 2006