Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,396,271 – 11,396,362 |
Length | 91 |
Max. P | 0.945017 |
Location | 11,396,271 – 11,396,362 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.27 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -29.09 |
Energy contribution | -29.20 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.17 |
Mean z-score | -2.38 |
Structure conservation index | 0.77 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11396271 91 + 22407834 AAAUGUGCCCCCGAAAUGGUUUCAUAAAUGGCACUGCGCACGCCUCCGCGAAAAGGGGCGGCAGUGGGAAGGGGCAGAG--------GUGGGGGGAUGG ....((.((((((.....((..(........((((((...((((.((.......))))))))))))....)..))....--------.)))))).)).. ( -34.60) >DroSec_CAF1 113221 91 + 1 AAAUGUGCCCCCGAAAUGGUUUCAUAAAUGGCACUGCGCACGCCUCCGCGAAAAGGGGCGGCAGUGGGAGGGGGCAGAG--------GCGGGGGGAUGG ....((.((((((.....((..(.....(..((((((...((((.((.......))))))))))))..).)..))....--------.)))))).)).. ( -37.40) >DroSim_CAF1 120618 91 + 1 AAAUGUGCCCCCGAAAUGGUUUCAUAAAUGGCACUGCGCACGCCUCCGCGAAAAGGGGCGGCAGUGGCAGGGGGCAGAG--------GCGGGGGGAUGG ....((.((((((.....((..(.....((.((((((...((((.((.......)))))))))))).)).)..))....--------.)))))).)).. ( -42.70) >DroEre_CAF1 121206 90 + 1 AAAUGUGCCCCCGAAAUGGUUUCAUAAAUGGCACUGCGCACGCCUCUGCGAAAAGGGGCGGCAGUGGGAGGGGCCGCGG--------G-AGGGGAAAGA .......((((((....(((..(........((((((...(((((((......)))))))))))))...)..))).)))--------)-.))....... ( -34.80) >DroYak_CAF1 117089 91 + 1 AAAUGUGCCCCCGAAAUGGUUUCAUAAAUGGCACUGCGCACGCCUCCGCGAAAAGGGGCGGCAGUGGGAGGGGCAGGGG--------GCAGGGGGUAGG .....(((((((......((..(.....((.(.((.(.((((((.((.(.....).)).))).))).).))).)).)..--------)).))))))).. ( -35.80) >DroAna_CAF1 101267 98 + 1 AAAUGUGCCCCCGAAAUGGUUUCAUAAAUGGCUCUGCGCACGCCUUGUCCAGGAGGGG-GGCAAGGGUCGGGGGCAUGGUGUACACACCAGGUGUAUGG ....((((((((((................((.....))...((((((((.......)-))))))).))))))))))((((....)))).......... ( -40.40) >consensus AAAUGUGCCCCCGAAAUGGUUUCAUAAAUGGCACUGCGCACGCCUCCGCGAAAAGGGGCGGCAGUGGGAGGGGGCAGAG________GCAGGGGGAUGG ...(.((((((((((.....)))........((((((...((((((........))))))))))))...))))))).)..................... (-29.09 = -29.20 + 0.11)
Location | 11,396,271 – 11,396,362 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 85.27 |
Mean single sequence MFE | -32.23 |
Consensus MFE | -26.71 |
Energy contribution | -27.43 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.09 |
Mean z-score | -2.96 |
Structure conservation index | 0.83 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11396271 91 - 22407834 CCAUCCCCCCAC--------CUCUGCCCCUUCCCACUGCCGCCCCUUUUCGCGGAGGCGUGCGCAGUGCCAUUUAUGAAACCAUUUCGGGGGCACAUUU ............--------...(((((((...(((((((((.((((......)))).))).))))))........(((.....))))))))))..... ( -30.00) >DroSec_CAF1 113221 91 - 1 CCAUCCCCCCGC--------CUCUGCCCCCUCCCACUGCCGCCCCUUUUCGCGGAGGCGUGCGCAGUGCCAUUUAUGAAACCAUUUCGGGGGCACAUUU ............--------...(((((((...(((((((((.((((......)))).))).))))))........(((.....))))))))))..... ( -32.80) >DroSim_CAF1 120618 91 - 1 CCAUCCCCCCGC--------CUCUGCCCCCUGCCACUGCCGCCCCUUUUCGCGGAGGCGUGCGCAGUGCCAUUUAUGAAACCAUUUCGGGGGCACAUUU ............--------...(((((((((.(((((((((.((((......)))).))).)))))).)).....(((.....))))))))))..... ( -34.00) >DroEre_CAF1 121206 90 - 1 UCUUUCCCCU-C--------CCGCGGCCCCUCCCACUGCCGCCCCUUUUCGCAGAGGCGUGCGCAGUGCCAUUUAUGAAACCAUUUCGGGGGCACAUUU ..........-.--------.....((((((..(((((((((.((((......)))).))).))))))........(((.....)))))))))...... ( -29.50) >DroYak_CAF1 117089 91 - 1 CCUACCCCCUGC--------CCCCUGCCCCUCCCACUGCCGCCCCUUUUCGCGGAGGCGUGCGCAGUGCCAUUUAUGAAACCAUUUCGGGGGCACAUUU .........(((--------((((.........(((((((((.((((......)))).))).))))))........(((.....))))))))))..... ( -32.80) >DroAna_CAF1 101267 98 - 1 CCAUACACCUGGUGUGUACACCAUGCCCCCGACCCUUGCC-CCCCUCCUGGACAAGGCGUGCGCAGAGCCAUUUAUGAAACCAUUUCGGGGGCACAUUU .........(((((....)))))(((((((((.(((((((-........)).))))).(.((.....)))...............)))))))))..... ( -34.30) >consensus CCAUCCCCCCGC________CCCUGCCCCCUCCCACUGCCGCCCCUUUUCGCGGAGGCGUGCGCAGUGCCAUUUAUGAAACCAUUUCGGGGGCACAUUU ........................((((((...(((((((((.((((......)))).))).))))))........(((.....)))))))))...... (-26.71 = -27.43 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:57 2006