Locus 3893

Sequence ID 2L_DroMel_CAF1
Location 11,392,115 – 11,392,209
Length 94
Max. P 0.949318
window6125

overview

Window 5

Location 11,392,115 – 11,392,209
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -30.65
Consensus MFE -26.76
Energy contribution -26.57
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.40
Structure conservation index 0.87
SVM decision value 1.39
SVM RNA-class probability 0.949318
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11392115 94 - 22407834
AGGCUUAAAAACGGCGGAAAGCCAAGUGGGGCAGGGCAUUCGGCGUGAAGAGGGUCAUGCUCGAGCAACAGUCGUGGCCAAAAGGGAAGCAGAU
..((((......(((.....))).....((.((.(((.((((((((((......)))))).)))).....))).)).)).......)))).... ( -29.40)
>DroSec_CAF1 109009 94 - 1
AGGCUUAAAAACGGCGGAAAGCCAAGUGGAGCAGGGCAUUCGGCGUGAAGAGGGUCAUGCUCGAGCAACAGUCGUGGCCAAAAGGGAGCCAGAU
.(((((......(((.....)))...(((..((.(((.((((((((((......)))))).)))).....))).)).))).....))))).... ( -31.30)
>DroSim_CAF1 116077 94 - 1
AGGCUUAAAAACGGCGGAAAGCCAAGUGGGGCAGGGUAUUCGGCGUGAAGAGGGUCAUGCUCGAGCAACAGUCGUGGCCAAAAGGGAAGCAGAU
.((((.....(((((.....(((......)))......((((((((((......)))))).)))).....)))))))))............... ( -27.00)
>DroEre_CAF1 117086 89 - 1
AGGCUUAAAAACGGCUGAAAGCCAAGU---GCAGGGCGUUCGGCGUGAAGAGGGUCAUGCUCGAGCAACAGUCGUGGCCAAAAGGGAAGCAG--
.((((.....(((((((...(((....---....)))(((((((((((......)))))).)))))..))))))))))).............-- ( -34.90)
>consensus
AGGCUUAAAAACGGCGGAAAGCCAAGUGGGGCAGGGCAUUCGGCGUGAAGAGGGUCAUGCUCGAGCAACAGUCGUGGCCAAAAGGGAAGCAGAU
.((((.....(((((.....(((..(.....)..))).((((((((((......)))))).)))).....)))))))))............... (-26.76 = -26.57 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:55 2006