Locus 3890

Sequence ID 2L_DroMel_CAF1
Location 11,386,235 – 11,386,339
Length 104
Max. P 0.999157
window6120

overview

Window 0

Location 11,386,235 – 11,386,339
Length 104
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 78.68
Mean single sequence MFE -43.84
Consensus MFE -26.76
Energy contribution -28.36
Covariance contribution 1.60
Combinations/Pair 1.21
Mean z-score -3.34
Structure conservation index 0.61
SVM decision value 3.40
SVM RNA-class probability 0.999157
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11386235 104 + 22407834
GUGCAUCUCGCGGCAACGCCAGGUUGUCGCCAACUGCCAACUGCCAA-------CAUUCAACUUGCAAGUGGCGAGUGGUUGGU-GGUUGGCUGCCUGGUUAGUUGGUAAGU
..((((((.(((....))).))).))).(((((((((((((..((((-------(.....((((((.....)))))).))))).-.)))))).........))))))).... ( -46.40)
>DroSec_CAF1 103227 100 + 1
GUGCAUCUCGCGGCAACGCCAGGUUGUCGCCAACUGCCAACUGCCAA-------CAUUCAACUUGCAAGUGG----UGGCGAGU-GGUUGGCUGCCUGGUUAGUUGGUAAGU
..((((((.(((....))).))).))).(((((((((((...(((((-------(.....((((((......----..))))))-.))))))....))).)))))))).... ( -41.20)
>DroSim_CAF1 110192 100 + 1
GUGCAUCUCGCGGCAACGCCAGGUUGUCGCCAACUGCCAACUGCCAA-------CAUUCAACUUGCAAGUGG----UGGCGAGU-GGUUGGCUGCCUGGUUAGUUGGUAAGU
..((((((.(((....))).))).))).(((((((((((...(((((-------(.....((((((......----..))))))-.))))))....))).)))))))).... ( -41.20)
>DroYak_CAF1 106564 103 + 1
GUGCAUCU-GCGGCAACGCCAGGUUGUCGCCAAGUGCCAACUGCCAACAUCCAACGUUCAACUCGCAAGU-------GGCGAGU-GGUUGGCUGUUUGGUAAGUUGGUAAGU
........-((((((((.....))))))))....(((((((((((((((.(((((.....((((((....-------.))))))-.))))).)).))))).))))))))... ( -45.00)
>DroAna_CAF1 91776 91 + 1
GUGCAUCUCGAGGCAACGCCAGGUUGUCGCCAACUGCCAAG-------------------AGUGGUAAGUGGUAGUUGGCUGGCGGGCUGGCGGGAUGGCAAAGUGGCAA--
...((((((..(....)(((((.((((((((((((((((..-------------------.........))))))))))).))))).)))))))))))((......))..-- ( -45.40)
>consensus
GUGCAUCUCGCGGCAACGCCAGGUUGUCGCCAACUGCCAACUGCCAA_______CAUUCAACUUGCAAGUGG____UGGCGAGU_GGUUGGCUGCCUGGUUAGUUGGUAAGU
..((((((.(((....))).))).))).(((((((((((...(((((..........((.((((((............)))))).)))))))....)))).))))))).... (-26.76 = -28.36 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:51 2006