Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,382,386 – 11,382,503 |
Length | 117 |
Max. P | 0.925405 |
Location | 11,382,386 – 11,382,503 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.79 |
Mean single sequence MFE | -36.32 |
Consensus MFE | -31.96 |
Energy contribution | -31.60 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.56 |
Structure conservation index | 0.88 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11382386 117 - 22407834 -AUGAAAUAUAUUAUUGUUCUCAGUGUGUACUAAGUGAACAAUGGGGUUGCAGACUGAGAACGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUC-GGGGUUUGGUGCCUCCUGCGC -.((((((....(((((((((((((.((((((..((.....))..)).)))).))))))))))))).((....))...........))))))((...-(((((.....)))))..)).. ( -38.40) >DroSec_CAF1 99430 117 - 1 -UUUAACUAUAUUAUUGUUCUAAGUGUACACUAAGUGAACAGUGGGGUUGCAGACUGAGAACGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUU-GGGGUUUGGUGCCUCCUGCGC -...((((....((((((((..(((....)))....)))))))).))))(((((((((((((((...((....))...)))))).....)))))...-(((((.....))))))))).. ( -33.90) >DroSim_CAF1 104376 117 - 1 -CUUAACUAUAUUAUUGUUCUAAGUGUACACUAAGUGAACAAUGGGGUUGCAGACUGAGAGCGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUU-GGGGUUUGGUGCCUCCUGCGC -...((((....((((((((..(((....)))....)))))))).))))(((((((((((((((...((....))...)))).....)))))))...-(((((.....))))))))).. ( -33.90) >DroEre_CAF1 102889 118 - 1 GUGAAGCCACAUUAUUGUUCUCAGUGUGCACUAAGUGAACAAUGGGGUUGCAGACUGAGAGCGAUGUGCUUCGGCUUCUCGUUUUGAUUUCGGCUUU-GGGGUUUGGUGCCUCCUGCGC (.((((((....(((((((((((((.((((((..((.....))..)).)))).)))))))))))))......)))))).)............((...-(((((.....)))))..)).. ( -44.90) >DroYak_CAF1 102271 119 - 1 AAUAAGCUAUAUUAUUGUUCUCAGUGUGCAUUAAGUGAACAAUGGGGUUGCAGACUAAGAACGAUGUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUUCGGGGUUUGGUGCCUCCUGCGC ....((((....((((((((.(............).)))))))).))))((((....(((((((...((....))...))))))).............(((((.....))))))))).. ( -30.50) >consensus _AUAAACUAUAUUAUUGUUCUCAGUGUGCACUAAGUGAACAAUGGGGUUGCAGACUGAGAACGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUU_GGGGUUUGGUGCCUCCUGCGC ....((((....((((((((..(((....)))....)))))))).))))(((((((((((((((...((....))...)))))).....)))))....(((((.....))))))))).. (-31.96 = -31.60 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:48 2006