Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,378,045 – 11,378,182 |
Length | 137 |
Max. P | 0.921871 |
Location | 11,378,045 – 11,378,143 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -18.39 |
Energy contribution | -20.45 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -3.27 |
Structure conservation index | 0.60 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11378045 98 + 22407834 AUGGCUUAAUUUGUUAGACGUUAUCGCUUCCGCUUAAAGCCAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCAACUGC---------------UGCAACUGC-------AAC .((((((.(..((..((.((....))))..))..).))))))..(((.((((((((((......))))))))))(((((((.....---------------)))))))))-------).. ( -34.10) >DroSec_CAF1 95120 89 + 1 AUGGCUUAAUUUGUUAGACGUUAUCGCUUCCGCUUAAAGCCAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCA------------------------ACUGC-------AAC .((((((.(..((..((.((....))))..))..).))))))......((((((((((......)))))))))).(((((.------------------------...))-------))) ( -28.90) >DroSim_CAF1 100045 89 + 1 AUGGCUUAAUUUGUUAGACGUUAUCGCUUCCGCUUAAAGCCAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCA------------------------ACUGC-------AAC .((((((.(..((..((.((....))))..))..).))))))......((((((((((......)))))))))).(((((.------------------------...))-------))) ( -28.90) >DroEre_CAF1 98634 95 + 1 AUGGCUUAAUUUGUUAGACGUUAUCGCUUCCGCUUAAAGCCAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCAACU------------------GCAACUGC-------AAC .((((((.(..((..((.((....))))..))..).))))))..(((.((((((((((......))))))))))((((((....------------------))))))))-------).. ( -33.30) >DroYak_CAF1 97879 76 + 1 AUGGCUUAAUUUGUUAGACGUUAUCGCUUCCGCUUAAAGCCAACUG-------------CAAAAUGCAUUUGCUAGUUGCAACU------------------------GC-------AAC .((((((.(..((..((.((....))))..))..).))))))....-------------.....((((.((((.....)))).)------------------------))-------).. ( -20.00) >DroAna_CAF1 85070 120 + 1 AUGGCUUAAUUUGUUAGACGUUAUCGCUUCCGCUCAAAGCCAACUGCCGGCGAGUGCAACAAAAUGCAUUUUCCAGUUGCAACAGCCCCAGCCAGAGGAACUGCAACUGCGGCAGGUAAC .((((((....((..((.((....))))..))....)))))).(((((((.(((((((......))))))).))(((((((....((.(.....).))...)))))))..)))))..... ( -40.10) >consensus AUGGCUUAAUUUGUUAGACGUUAUCGCUUCCGCUUAAAGCCAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCAACU_____________________ACUGC_______AAC .((((((.(..((..((.((....))))..))..).))))))..(((.((((((((((......))))))))))....)))....................................... (-18.39 = -20.45 + 2.06)
Location | 11,378,085 – 11,378,182 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -31.98 |
Consensus MFE | -17.28 |
Energy contribution | -20.08 |
Covariance contribution | 2.80 |
Combinations/Pair | 1.10 |
Mean z-score | -2.28 |
Structure conservation index | 0.54 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11378085 97 + 22407834 CAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCAACUGCUGCAACUGCAACUUGUUCUGUGCUUUAAGGGGUGAAGUGAGGGGCGGACAG ...(((((((((((((((......))))))))))(((((((.....))))))).......(((((.(((((((.....))))))).))))))).))) ( -34.70) >DroSec_CAF1 95160 88 + 1 CAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCA---------ACUGCAACUUGUUCUGUGCUUUAAGGGGGGAAGUGAGGGGUGGACAG ...(..((((((((((((......))))))))))((((((.---------...))))))..((((.(.(.....).).))))......))..).... ( -29.30) >DroSim_CAF1 100085 88 + 1 CAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCA---------ACUGCAACUUGUUCUGUGCUUUAAGGGGGGAAGUGAGGGGUGGACAG ...(..((((((((((((......))))))))))((((((.---------...))))))..((((.(.(.....).).))))......))..).... ( -29.30) >DroEre_CAF1 98674 92 + 1 CAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCAACU---GCAACUGCAACUCGUUCUCUGCUCCAGCGGGG--AGUGAGGGGGGCACAG ....((((((((((((((......))))))))))((((((....---)))))).(..((((((((((((....))))))--))))))..)))))... ( -43.40) >DroYak_CAF1 97919 75 + 1 CAACUG-------------CAAAAUGCAUUUGCUAGUUGCAACU---------GCAACUUGUUCUGGUCUCCAAGGGGGGCGGUGAGGGGUGGACAG ((((((-------------((((.....))))).)))))...(.---------.(..(((...(((.((((....)))).))).)))..)..).... ( -23.20) >consensus CAACUGCCGGCGAGUGCAACAAAAUGCAUUUGCUAGUUGCAACU______ACUGCAACUUGUUCUGUGCUUUAAGGGGGGAAGUGAGGGGUGGACAG ...(((((((((((((((......))))))))))(((((((...........)))))))..(((....((((....))))....))).))))).... (-17.28 = -20.08 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:46 2006