Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,377,399 – 11,377,496 |
Length | 97 |
Max. P | 0.609403 |
Location | 11,377,399 – 11,377,496 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.12 |
Mean single sequence MFE | -29.93 |
Consensus MFE | -16.86 |
Energy contribution | -17.42 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.76 |
Structure conservation index | 0.56 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11377399 97 - 22407834 UAUCCGCUGACCA--GCAAAUAAUUU-UUGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUUCACGAGGGAUUUACCUUUU-------------------GGGGAAGGU-AAAAUGUUUC ..((((((((((.--(((((.....)-))))(((((((.....))))))).)))))))((....))..)))(((((((((.-------------------...))))))-)))....... ( -29.00) >DroSec_CAF1 94465 96 - 1 UACCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU-------------------GGGGAAGGU-AAAAUGUU-C ((((.(((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-).......-. ( -29.00) >DroSim_CAF1 99382 97 - 1 UACCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCACGAGGGAUUUACCUUUU-------------------GGGGAAGGU-AAAAUGUUUU ((((.(((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-)......... ( -29.00) >DroEre_CAF1 97991 96 - 1 UAGCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU-------------------GGGGAAGGU-ACAAUGUU-C ..((((((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-........-. ( -29.10) >DroYak_CAF1 97194 96 - 1 UACCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU-------------------GGGGAAGGU-AAAACGUU-C ((((.(((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-).......-. ( -29.00) >DroAna_CAF1 84505 118 - 1 UAUCCCUUGACCGUUGCAAAUUAUUUCUGGCAAAUAUUACAACAAUAUUUU-GUGACCUGUCCGUGAGGGAAUUGCCCAUUCCUUCCGACCUUCCAAGAGAGGGAUGGCGAUGAUGUU-C ..(((((((((.((..((((.((((..((..........))..)))).)))-)..))..)))...))))))((((((.((((((..(..........)..))))))))))))......-. ( -34.50) >consensus UACCCGCUGACCA__GCAAAUAAUUU_UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU___________________GGGGAAGGU_AAAAUGUU_C ..((((((((((...((............))(((((((.....))))))).))))))).......(((((.....))))).....................)))................ (-16.86 = -17.42 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:45 2006