Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,375,541 – 11,375,647 |
Length | 106 |
Max. P | 0.558520 |
Location | 11,375,541 – 11,375,647 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 91.23 |
Mean single sequence MFE | -31.44 |
Consensus MFE | -25.68 |
Energy contribution | -25.92 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.35 |
Structure conservation index | 0.82 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11375541 106 - 22407834 AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC-CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUAUCGACUUUCUUUUCCGAGGCGCCCAAUUAGGCA ...((((((((....))))))))(((........((-....))......((((....))))))).(((......(((...........))))))(((......))). ( -30.80) >DroSec_CAF1 92620 106 - 1 AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC-CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUAUCAACUUUCCUUUCCAAGGCGCCCAAUUAGACA ...((((((((....))))))))(((..........-...(((.....(((((....)))))....))).............(((.....))).))).......... ( -28.30) >DroSim_CAF1 97519 106 - 1 AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC-CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUUUCGACUUUCCUUUCCGAGGCGCCCAAUUAGGCA ...((((((((....))))))))(((........((-....))......((((....))))))).(((......(((...........))))))(((......))). ( -30.80) >DroEre_CAF1 96176 103 - 1 AAAACUGCAGUGUCGAUUGCAGCGGCUUUUCCUCCCCCGGGGGACUAACGGUGGUUCCACCG----CCCAACUAUCGACUUUCCUUUCCAAGGCGCCCAAUUAGGCA ...........((((((.(..(.(((...((((((...)))))).....((((....)))))----)))..).))))))...(((.....))).(((......))). ( -31.50) >DroYak_CAF1 95241 101 - 1 AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCCUCCC-CAGGGAACUAACGGUGGUUCCACCG----CCCAACAAUCGACUUUCCU-GCCAAGGCGCCCAAUUAGGCU ......((((.((((((((..(.(((.((((((...-.)))))).....((((....)))))----)))..))))))))....))-))......(((......))). ( -35.80) >consensus AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC_CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUAUCGACUUUCCUUUCCAAGGCGCCCAAUUAGGCA ...((((((((....))))))))(((..............(((.....(((((....)))))....))).............(((.....))).))).......... (-25.68 = -25.92 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:39 2006