Locus 3882

Sequence ID 2L_DroMel_CAF1
Location 11,371,192 – 11,371,284
Length 92
Max. P 0.959843
window6106

overview

Window 6

Location 11,371,192 – 11,371,284
Length 92
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 80.74
Mean single sequence MFE -33.96
Consensus MFE -18.06
Energy contribution -19.10
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -2.68
Structure conservation index 0.53
SVM decision value 1.51
SVM RNA-class probability 0.959843
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11371192 92 + 22407834
-----------------GUUAUCCCAUGCAGAUGGUUGCAGGGGGAUUGUGACAGGCAAUGGAGGU---------GGGGCUGGGAAUCGGCAUCAUCUUUUGGGCUUGAAAUUUCUAA
-----------------...(((((.(((((....)))))..))))).....(((((...((((((---------(..((((.....))))..)))))))...))))).......... ( -32.50)
>DroSec_CAF1 88341 92 + 1
-----------------GUUAUCCCAUGCAGAUGGAUGCAGGGGGAUUGUGACAGGCAAUGGAGGU---------GGGGCUGGGAAUCGGCAUCAUCUUUUGGGCUUGAAAUUUCUAA
-----------------...(((((.((((......))))..))))).....(((((...((((((---------(..((((.....))))..)))))))...))))).......... ( -32.90)
>DroSim_CAF1 93131 92 + 1
-----------------GUUAUCCCAUGCAGAUGGAUGCAGGGGGAUUGUGACAGGCAAUGGAGGU---------GGGGCUGGGAAUCGGCAUCAUCUUUUGGGCUUGAAAUUUCUAA
-----------------...(((((.((((......))))..))))).....(((((...((((((---------(..((((.....))))..)))))))...))))).......... ( -32.90)
>DroEre_CAF1 91834 108 + 1
GAUGGGAUGGGGAUUGGGAUAUCCCAUGCAGAUGGGUGCACG-GGAUAGCGGCAGGCCAUGGAGGU---------GGGGCUGGGAAUCGGCAUCAUCUUUUGGGCUUGAAAUUUCUAA
.......(((..(((....((((((.((((......)))).)-)))))....((((((..((((((---------(..((((.....))))..)))))))..)))))).)))..))). ( -41.20)
>DroYak_CAF1 90340 96 + 1
---------------------UCCCAUACUCCCAUCUGCAUG-GGAUUGUGACAGGCAAUGGGGUUUGGGGCUUGGGGGCUGGGAAUCGGCAUCAUCUUUUGGGCUUGAAAUUUCUAA
---------------------...((((.((((((....)))-))).)))).........(..((((.(((((..((((.(((.........))).))))..))))).))))..)... ( -30.30)
>consensus
_________________GUUAUCCCAUGCAGAUGGAUGCAGGGGGAUUGUGACAGGCAAUGGAGGU_________GGGGCUGGGAAUCGGCAUCAUCUUUUGGGCUUGAAAUUUCUAA
....................(((((.((((......))))..))))).....(((((...((((((.........(..((((.....))))..)))))))...))))).......... (-18.06 = -19.10 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:37 2006