Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,205,989 – 1,206,091 |
Length | 102 |
Max. P | 0.978031 |
Location | 1,205,989 – 1,206,091 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 88.22 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -18.76 |
Energy contribution | -21.20 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.04 |
Mean z-score | -3.09 |
Structure conservation index | 0.68 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1205989 102 + 22407834 UUUCUUCCUUUUCCAGGACCUCCUCCUC-------------GCCUUCCAUAAUAGCAAUCACAGAAAUGUGUUCUAAUUUAAAGCCAUAUAUAUGGAAAAGCAAACAGAGGAGGA .....((((.....))))(((((((...-------------((.(((((((.(((.((.((((....)))))))))...((......))..)))))))..)).....))))))). ( -26.10) >DroSec_CAF1 1694 115 + 1 UUUCUUCCCUUUCCAGGACCUCCUCCUCCUCGCCCUACUCCGCCUUCCAUAAUAGCAAUCACAGAAAUGUGUUCUAAUUUAAAGCCAUAUAUAUGGAAAAGCAAACAGAGGAGGA .......(((....)))......((((((((((........))...........((...((((....)))).............((((....))))....)).....)))))))) ( -25.90) >DroSim_CAF1 1689 112 + 1 UUUCCUCCCUUUCCAGGACCUCCUCCUCCUC---CCACUCUGCCUUCCAUAAUAGCAAUCACAGAAAUGUGUUCUAAUUUAAAGCCAUAUAUAUGGAAAAGCAAACAGAGGAGGA ..((((........)))).....((((((((---......(((.(((((((.(((.((.((((....)))))))))...((......))..)))))))..)))....)))))))) ( -27.70) >DroEre_CAF1 1641 108 + 1 -UUCGUCCUUUUCCAGGACCUCCUGCUCCU------CCGCCUCCUGCCAUAAUAGCAAUCGCAGAAAUGUGUUCUAAUUUAAAGCCAUAUAUAUGGAAAAGCAAACAGAGGCGGA -...(((((.....)))))..........(------(((((((.(((.....(((.((.((((....)))))))))........((((....))))....)))....)))))))) ( -30.50) >DroYak_CAF1 1753 115 + 1 UUUCUUCCUUUGCCAGGACCUCCUCCUCCUUCUCAUCCGCCUCCUGCCAUAAUAGCAAUCACAGAAAUGUGUUCUAAUUUAAAGCCAUAUAUAUGGAGAAGCAAACAGAGGCGGA .....((((.....)))).................((((((((.(((.....(((.((.((((....)))))))))........((((....))))....)))....)))))))) ( -28.00) >consensus UUUCUUCCUUUUCCAGGACCUCCUCCUCCU______ACGCCGCCUUCCAUAAUAGCAAUCACAGAAAUGUGUUCUAAUUUAAAGCCAUAUAUAUGGAAAAGCAAACAGAGGAGGA .....(((.......)))..((((((((........................(((.((.((((....)))))))))........((((....))))...........)))))))) (-18.76 = -21.20 + 2.44)
Location | 1,205,989 – 1,206,091 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.22 |
Mean single sequence MFE | -37.44 |
Consensus MFE | -26.78 |
Energy contribution | -28.42 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.06 |
Mean z-score | -3.35 |
Structure conservation index | 0.72 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.978031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1205989 102 - 22407834 UCCUCCUCUGUUUGCUUUUCCAUAUAUAUGGCUUUAAAUUAGAACACAUUUCUGUGAUUGCUAUUAUGGAAGGC-------------GAGGAGGAGGUCCUGGAAAAGGAAGAAA .((((((((..(((((((.(((((...(((((..(....(((((.....)))))..)..)))))))))))))))-------------))))))))))((((.....))))..... ( -36.50) >DroSec_CAF1 1694 115 - 1 UCCUCCUCUGUUUGCUUUUCCAUAUAUAUGGCUUUAAAUUAGAACACAUUUCUGUGAUUGCUAUUAUGGAAGGCGGAGUAGGGCGAGGAGGAGGAGGUCCUGGAAAGGGAAGAAA (((((((((.((((((((.(((((...(((((..(....(((((.....)))))..)..))))))))))))))))))(.....)..)))))))))..((((....))))...... ( -38.30) >DroSim_CAF1 1689 112 - 1 UCCUCCUCUGUUUGCUUUUCCAUAUAUAUGGCUUUAAAUUAGAACACAUUUCUGUGAUUGCUAUUAUGGAAGGCAGAGUGG---GAGGAGGAGGAGGUCCUGGAAAGGGAGGAAA (((((((((.((((((((.(((((...(((((..(....(((((.....)))))..)..))))))))))))))))))...)---)))))))).....((((....))))...... ( -40.10) >DroEre_CAF1 1641 108 - 1 UCCGCCUCUGUUUGCUUUUCCAUAUAUAUGGCUUUAAAUUAGAACACAUUUCUGCGAUUGCUAUUAUGGCAGGAGGCGG------AGGAGCAGGAGGUCCUGGAAAAGGACGAA- (((.(((((((((.((...(((((...(((((..(....(((((.....)))))..)..)))))))))).)).))))))------)))....))).(((((.....)))))...- ( -35.80) >DroYak_CAF1 1753 115 - 1 UCCGCCUCUGUUUGCUUCUCCAUAUAUAUGGCUUUAAAUUAGAACACAUUUCUGUGAUUGCUAUUAUGGCAGGAGGCGGAUGAGAAGGAGGAGGAGGUCCUGGCAAAGGAAGAAA (((.((((((((((((((((((((...(((((..(....(((((.....)))))..)..))))))))))..)))))))))).....))))).)))..((((.....))))..... ( -36.50) >consensus UCCUCCUCUGUUUGCUUUUCCAUAUAUAUGGCUUUAAAUUAGAACACAUUUCUGUGAUUGCUAUUAUGGAAGGCGGAGG______AGGAGGAGGAGGUCCUGGAAAAGGAAGAAA (((((((((..(((((((.(((((...(((((..(....(((((.....)))))..)..)))))))))))))))))..........)))))))))..((((.....))))..... (-26.78 = -28.42 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:42 2006