Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,347,570 – 11,347,677 |
Length | 107 |
Max. P | 0.719026 |
Location | 11,347,570 – 11,347,677 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -14.65 |
Consensus MFE | -11.47 |
Energy contribution | -11.64 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.78 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.719026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11347570 107 - 22407834 AAAAUUGAUUUACGCCGGCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUUCUCCA---AAACAACCAACAAAUUGUCAACACACAUUCAC--CAAAAACGCCG------CGUA ..........(((((.(((..............(((((((.(((....)))((((.....---....)))).)))))))((......))......--.......))))------)))) ( -18.70) >DroVir_CAF1 59235 99 - 1 AAAAUUGAUUUACGAU-GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUACCACACA--AAAAACCUACAAAUUGUCAACACAAAC--------AAAAC--AG------CAGA ....(((((....((.-((.......))))...(((((((((((....)))(((........--....)))))))))))))))).......--------.....--..------.... ( -12.70) >DroGri_CAF1 76735 102 - 1 AAAAUUGAUUUACGAU-GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUAACACACACAAAAAACCAACAAAUUGUCAACACAAAC--------AAAA-------ACAACAGA ....(((((.......-((((..((.(((((......)).)))))..))))(((..............)))........))))).......--------....-------........ ( -12.84) >DroYak_CAF1 66261 109 - 1 AAAAUUGAUUUACGCCGCCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUUCUCCA---AAACAACCAACAAAUUGUCAACACACACACUCAAAGAAAACCCCG------CGUA ..........(((((.((........)).....(((((((.(((....)))((((.....---....)))).)))))))............................)------)))) ( -14.60) >DroMoj_CAF1 86766 107 - 1 AAAAUUGAUUUACGAC-GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUAACACACAGAAAAAACCUACAAAUUGUCAACACAAAC--------AAAAC--AGCAGCAGCAGA .............(((-((((..((.(((((......)).)))))..))))(((..............)))........))).........--------.....--.((....))... ( -15.24) >DroAna_CAF1 57869 104 - 1 AAAAUUGAUUUACGCCGGCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUUCUCCA---AAACAACCAACAAAUUGUCAACACACAUUCAC--AAACAACCUCG---------A ....(((((........((((..((.(((((......)).)))))..))))((((.....---....))))........)))))...........--...........---------. ( -13.80) >consensus AAAAUUGAUUUACGAC_GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUACCACA___AAAAAACCAACAAAUUGUCAACACAAAC________AAAAC__CG______CAGA ....(((((........((((..((.(((((......)).)))))..))))(((..............)))........))))).................................. (-11.47 = -11.64 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:28 2006