Locus 3876

Sequence ID 2L_DroMel_CAF1
Location 11,345,807 – 11,345,906
Length 99
Max. P 0.558061
window6096

overview

Window 6

Location 11,345,807 – 11,345,906
Length 99
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 87.58
Mean single sequence MFE -31.88
Consensus MFE -21.43
Energy contribution -22.48
Covariance contribution 1.05
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.67
SVM decision value 0.05
SVM RNA-class probability 0.558061
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11345807 99 + 22407834
GGUUUUUGG-CUGG-CUGUCAUGUGCCAAAAGCAGCAGAAGCAGCAGCAACAACCGAAGGGGCAUUGCUUCUGCUUGCAUCAUUUAGCC-CGGCUUUAUGAG
.((((((((-(..(-(......))))))))))).(((..(((((.(((((...((....))...))))).)))))))).((((..(((.-..)))..)))). ( -37.90)
>DroSec_CAF1 63056 93 + 1
GGUUUUUGG-CUGG-CUGUCAUGUGCCAACAGCAG------CAGCAGCAACAACCGAAGGGGCAUUGCUUCUGCUUGCAUCAUUUAGCC-CGGCUUUAUGAG
(((...(((-(...-..))))...)))....((((------(((.(((((...((....))...))))).)))).))).((((..(((.-..)))..)))). ( -33.80)
>DroSim_CAF1 67868 93 + 1
GGUUUUUGG-CUGG-CUGUCAUGUGCCAAAAGCAG------CAGCAGCAACAACCGAAGGGGCAUUGCUUCUGCUUGCAUCAUUUAGCC-CGGGUUUAUGAG
.((((((((-(..(-(......)))))))))))((------(((.(((((...((....))...))))).)))))....((((..(((.-...))).)))). ( -33.20)
>DroEre_CAF1 66307 88 + 1
GGUUUUUGG-CUGG-CUGUCAUGUGCCAAAAGCAG------CAGCAGCAACAACCGAAGGGGCAUUGCUUCUGCUUGCAUCAUUUAG------CUUUAUGAG
.((((((((-(..(-(......)))))))))))((------(((.(((((...((....))...))))).)))))....((((....------....)))). ( -30.70)
>DroAna_CAF1 56388 84 + 1
GGUUUUUGGGCUGUCCUGUCAUGUGCCAAAAGCA------------GAAACAACCGAAGGGGCAUUG------CUUGCAUCAUUUAGCCCCGGCUUUAUGAG
.((((((((((((......)).)).)))))))).------------.......((....))(((...------..))).((((..(((....)))..)))). ( -23.80)
>consensus
GGUUUUUGG_CUGG_CUGUCAUGUGCCAAAAGCAG______CAGCAGCAACAACCGAAGGGGCAUUGCUUCUGCUUGCAUCAUUUAGCC_CGGCUUUAUGAG
.((((((((.(.............)))))))))........(((.(((((...((....))...))))).)))......((((..(((....)))..)))). (-21.43 = -22.48 +   1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:27 2006