Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,345,274 – 11,345,367 |
Length | 93 |
Max. P | 0.539457 |
Location | 11,345,274 – 11,345,367 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.20 |
Mean single sequence MFE | -17.66 |
Consensus MFE | -11.81 |
Energy contribution | -12.04 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -1.38 |
Structure conservation index | 0.67 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11345274 93 - 22407834 -CGAAAGACCUUUCAUAUUUCAGCCAAUUAGGAAA-ACGAUCGCAACAGCACAUCCAACAAGCAUCACUAAUUGGCAGACGUUUAACACUCCCC--C -.((((....))))........(((((((((((..-....))((....)).................)))))))))..................--. ( -16.30) >DroPse_CAF1 77351 82 - 1 -CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGG-----------CAACAAGCAACACUAAUUGGCAGACAUUUAACACUCCCC--C -.((((....))))........(((((((((((..-....))(.-----------...)........)))))))))..................--. ( -17.00) >DroEre_CAF1 65752 91 - 1 -CGU-AGGCCUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGCAACAACAGAUCCAACAAGCAUCACUAAUUGGCAGACGUUUAACACUCCC---C -...-.................(((((((((((..-..((((.........)))).........)).))))))))).................---. ( -15.72) >DroYak_CAF1 63948 95 - 1 -CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGCAGCAACAGAUCCAACAAGCAUCACUAAUUGGCAGACGUUUAACACUCCCCCUC -.((((....))))........(((((((((((..-..((((.........)))).........)).)))))))))..................... ( -17.42) >DroMoj_CAF1 82814 95 - 1 UUGUAUGGCAAUUCAUAUUUUAGCCAAUUAGGGGAAACGAUCUCAAUGGAGCAUCGAACAGACGGCACUAAUUGGCAGGCAUUUAACACUUUCC--C ..((((((....))))))....(((((((((.(....)((((((....))).)))............)))))))))..................--. ( -21.90) >DroPer_CAF1 77825 82 - 1 -CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGG-----------CAACAAGCUACACUAAUUGGCAGACAUUUAACACUCCCC--C -.((((....))))........(((((((((((..-....))((-----------(.....)))...)))))))))..................--. ( -17.60) >consensus _CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA_ACGAUCGCAACA_CA_AUCCAACAAGCAUCACUAAUUGGCAGACAUUUAACACUCCCC__C ..((((....))))........(((((((((....................................)))))))))..................... (-11.81 = -12.04 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:26 2006