Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,344,057 – 11,344,156 |
Length | 99 |
Max. P | 0.508071 |
Location | 11,344,057 – 11,344,156 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.52 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -16.32 |
Energy contribution | -16.93 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.11 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11344057 99 + 22407834 AAGACUGACCUACAAAGGAGCAGCAGACAAUGGCAGAUGACCUCAUAAAUUGCAUCGUUAUGAGGUUCAUAA----AUAAAUUAUUGCUUCAUAUUCAUAAUG ................((((((((........))..((((((((((((.........)))))))).))))..----.........))))))............ ( -21.00) >DroPse_CAF1 76306 99 + 1 AAGGCUGACCUACAAAGGAGCUCAAGACAAUGCCCGAUGACCUCAUAAACUGCCUCGUUAUGAGGUUCAUAA----ACAUAUUACGGCUUCAUAUUCAUAAUG .((((((.........((.((..........)))).((((((((((((.(......))))))))).))))..----........))))))............. ( -22.30) >DroEre_CAF1 64524 99 + 1 GAGACUGACCUACAAAGGAGCUGCAGACAAUGGCAGAUGACCUCAUAAAUUGCAUCGUUAUGAGGUUCAUAA----AUAUAUUAUGGCUUCAUAUUCAUAAUG ........(((....)))..((((........))))((((((((((((.........)))))))).))))..----...((((((((........)))))))) ( -21.70) >DroWil_CAF1 69259 87 + 1 ---------CGACAAACGA-------ACAAAAGCAGAUGACCUCAUAAAUAGCCUCGUUAUGAGGUUCAUAAAUAAAUAUAUUAUUGCUUCAUAUUCAUAAUG ---------........((-------(...((((((((((((((((((.........)))))))).)))).((((....)))).))))))....)))...... ( -16.50) >DroAna_CAF1 54779 99 + 1 ACGGAUGACCUACAAAGGAGCUGCAGACAAUGCCAGAUGACCUCAUAAAUUGGCUCGUUAUGAGGUUCAUAA----AAAUAUUAUUGCUUCAUAUUCAUAAUG ..((....))......(((((.(((.....)))...((((((((((((.........)))))))).))))..----..........)))))............ ( -20.60) >DroPer_CAF1 76769 99 + 1 AAGGCUGACCUACAAAGGAGCCCAAGACAAUGCCCGAUGACCUCAUAAACUGCCUCGUUAUGAGGUUCAUAA----AAAUAUUACGGCUUCAUAUUCAUAAUG .(((....))).....((((((..............((((((((((((.(......))))))))).))))..----.........))))))............ ( -21.91) >consensus AAGGCUGACCUACAAAGGAGCUGCAGACAAUGCCAGAUGACCUCAUAAAUUGCCUCGUUAUGAGGUUCAUAA____AUAUAUUAUGGCUUCAUAUUCAUAAUG ................((((((..............((((((((((((.........)))))))).))))...............))))))............ (-16.32 = -16.93 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:25 2006