Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,340,445 – 11,340,550 |
Length | 105 |
Max. P | 0.814544 |
Location | 11,340,445 – 11,340,550 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -25.09 |
Consensus MFE | -20.68 |
Energy contribution | -21.88 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.14 |
Mean z-score | -1.61 |
Structure conservation index | 0.82 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11340445 105 - 22407834 GGAGGCCUUAGGUAUGACGAUAGUUUUUCUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCGGAAGAUUUAAUAGAUAUUAUCGUAGAUAGAAAGGUUUCUAGUUU (((((((((..((...((((((((...((((.(((.(((....))).)))....((((((....)))))).)))).))))))))..))...)))))))))..... ( -32.30) >DroSec_CAF1 57630 105 - 1 GGAUGCCUUAGGUAUGGCAAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGACGGAAGAUUUAAUAGAUAUCAUUGUAGACAGAAAGGUUUCUAGUUU (((.(((((..((...(((((.((.(((((..(((.(((....))).)))....((((.(....).))))))))).)).)))))..))...))))).)))..... ( -20.60) >DroSim_CAF1 62463 105 - 1 GGAUGCCUUAGGUAUGGCGAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCGGAAGAUUUAAUAGAUAUCAUCGUAGACAGAAAGGUUUCUAGUUU (((.(((((..((...(((((.((.(((((..(((.(((....))).)))....((((((....))))))))))).)).)))))..))...))))).)))..... ( -27.30) >DroEre_CAF1 61013 103 - 1 GGAGACCUUUUGAAUGGCGAUAGUUUUUGUAAGACGGCUUUG-GGUAAUCAAUCUUAGUCGCACGAUUUAAUAGAUACCAUCA-GGACAGAAAGGUUUCUAGUUU (((((((((((.......(((.((.(((((.(((((((.(((-((........)))))..)).)).))).))))).)).))).-.....)))))))))))..... ( -23.32) >DroYak_CAF1 59070 104 - 1 GGAGACCUUUGGUAUGGCGAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCUGA-AAUUUAAUAGAUAUCAUCAUGGACAGAAAGGUUUCUAGUUU ((((((((((.(((((..((((....(((......(((((.(((........))))))))...-....)))....))))..)))..))..))))))))))..... ( -21.92) >consensus GGAGGCCUUAGGUAUGGCGAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCGGAAGAUUUAAUAGAUAUCAUCGUAGACAGAAAGGUUUCUAGUUU (((((((((..((...(((((.((.(((((..(((.(((....))).)))....((((((....))))))))))).)).)))))..))...)))))))))..... (-20.68 = -21.88 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:24 2006