Locus 3870

Sequence ID 2L_DroMel_CAF1
Location 11,334,268 – 11,334,361
Length 93
Max. P 0.518218
window6090

overview

Window 0

Location 11,334,268 – 11,334,361
Length 93
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.94
Mean single sequence MFE -23.62
Consensus MFE -19.08
Energy contribution -20.08
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.81
SVM decision value -0.03
SVM RNA-class probability 0.518218
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11334268 93 - 22407834
AUGAUUCCAUAUGAAUUAUAAAUUGCUCGAUUUAUGCACAUUUCCACGGCCACUGGCAA-------UUGGCAUGGGUUGUG-AGAGGCUUUUAGGUUAAGU
(((((((.....))))))).....(((..(((((.((...((((.((((((..((.(..-------..).))..)))))))-))).))...)))))..))) ( -23.20)
>DroSec_CAF1 51494 94 - 1
AUGAUUCUAUAUGAAUUAUAAAUUGCUCGAUUUAUGCACAUUUCCACGGCCACUGGCAA-------UUGGCAUGGGUUGUGGUGAGGCUUUUAGGUUAAGU
(((((((.....))))))).....(((..(((((.((...((.((((((((..((.(..-------..).))..)))))))).)).))...)))))..))) ( -27.40)
>DroSim_CAF1 55774 94 - 1
AUGAUUCUAUAUGAAUUAUAAAUUGGUCGAUUUAUGCACAUUUCCACGGCCACUGGCAA-------UUGGCAUGGGUUGUGGUGAGGCUUUUAGGUUAAGU
(((((((.....))))))).........((((((.((...((.((((((((..((.(..-------..).))..)))))))).)).))...)))))).... ( -24.40)
>DroEre_CAF1 54778 98 - 1
AUGAUUCCAUAUGAAUUAUAAAUUGCUCGAUUUAUGCACAUUUCCACGGCCACUGGCAAUUGGCAAUUGGCAUUGAUUGU---GAGGCUUUUAGGUUAAGU
(((((((.....))))))).((..((((((((.((((.((.(((((..(((...)))...))).)).)))))).))))).---..)))..))......... ( -20.70)
>DroYak_CAF1 52663 91 - 1
AUGAUUCCAUAUGAAUUAUAAAUUGCUCGAUUUAUGCACAUUUCCACGGCCACUGGCAA-------UUGGCAUUGGUUGU---GAGGCUUUUAGGUUAAGU
(((((((.....))))))).....(((..(((((.((.(((..(((..((((.......-------.))))..)))..))---)..))...)))))..))) ( -22.40)
>consensus
AUGAUUCCAUAUGAAUUAUAAAUUGCUCGAUUUAUGCACAUUUCCACGGCCACUGGCAA_______UUGGCAUGGGUUGUG__GAGGCUUUUAGGUUAAGU
(((((((.....))))))).....(((..(((((.((...((..(((((((..((.((((.....)))).))..)))))))..)).))...)))))..))) (-19.08 = -20.08 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:22 2006